Table 2.
Genetic variant in pol gene of HIV-1 among the infected wives of IDUs.
| SAMPLE | PR GENE | RT GENE | FINAL SUBTYPE |
|---|---|---|---|
| MANIPUR001 | C | C | C |
| MANIPUR002 | C | BC | Discordant subtypes |
| MANIPUR003 | NA | C | C |
| MANIPUR005 | CRF_01AE | CRF_01AE | CRF_01AE |
| MANIPUR007 | C | C | C |
| MANIPUR009 | NA | C | C |
| MANIPUR011 | C | BC | Discordant subtypes |
| MANIPUR012 | C | C | C |
| MANIPUR013 | C | C | C |
| MANIPUR015 | NA | C | C |
| MANIPUR016 | NA | C | C |
| MANIPUR017 | C | BC | Discordant subtypes |
| MANIPUR018 | NA | C | C |
| MANIPUR020 | C | C | C |
| MANIPUR021 | B | BC | Discordant subtypes |
| MANIPUR022 | NA | C | C |
| MANIPUR023 | C | C | C |
| MANIPUR024 | C | C | C |
| MANIPUR025 | NA | C | C |
| MANIPUR027 | C | C | C |
| MANIPUR029 | C | C | C |
| MANIPUR030 | NA | C | C |
| MANIPUR031 | C | C | C |
| MANIPUR032 | C | C | C |
| MANIPUR033 | C | C | C |
| MANIPUR034 | C | C | C |
| MANIPUR036 | NA | CRF-01AE | CRF_01AE |
| MANIPUR037 | B | B | B |
| MANIPUR039 | C | C | C |
| MANIPUR040 | C | C | C |
| MANIPUR041 | C | C | C |
| MANIPUR042 | NA | C | C |
| MANIPUR043 | C | C | C |
| MANIPUR044 | NA | C | C |
| MANIPUR046 | C | C | C |
| MANIPUR047 | C | C | C |
| MANIPUR048 | C | C | C |
| MANIPUR049 | B | B | B |
| MANIPUR051 | BC | BC | URF_BC |
| MANIPUR052 | C | C | C |
| MANIPUR053 | C | C | C |
| MANIPUR054 | C | C | C |
| MANIPUR055 | B | B | B |
| MANIPUR056 | C | C | C |
The final subtype was assigned based on HIV subtyping tools; REGA (version 3.0)/jpHMM, COMET and phylogenetic tree. Recombination was further confirmed by Recombinant Identification Program (RIP) and bootstrapping in Simplot software 3.5.1. NA, not available; PR, protease; RT, reverse transcriptase.