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. Author manuscript; available in PMC: 2020 Jan 15.
Published in final edited form as: J Affect Disord. 2018 Sep 7;243:16–22. doi: 10.1016/j.jad.2018.09.003

Table 2.

Top 35 Non-Hispanic White GWAS Results. SNPs are the top hit SNPs from the GWAS analysis. Nearest gene is the annotated nearest gene to the SNP. Many SNPs were closest to the same gene. The table omits the duplicate genes to show unique annotated top genes. A1 is effect allele. A2 is other allele. MAF is the frequency of A1.

SNP Nearest Gene Al A2 MAF P-Value
rs6487668 PZP C A 0.2181 7.06 × 10−7
rs35426224 EML1 G A 0.9255 1.07 × 10−6
rs734152 FAM222A-AS1 G C 0.8804 1.13 × 10−6
rs12036147 CHRM3 A T 0.9116 1.28 × 10−6
rs79309730 SH3BP4 C T 0.9427 1.70 × 10−6
rs7298108 A2MP1 C T 0.8217 2.01 × 10−6
rs17118176 MDGA2 A G 0.9373 3.52 × 10−6
rs6485603 SYT13 G A 0.5506 4.76 × 10−6
rs143756124 MC5R T C 0.9320 4.90 × 10−6
rs6743806 SCG2 C G 0.7326 5.08 × 10−6
rs13171357 SLC1A3 G A 0.7185 5.27 × 10−6
rs7194099 ZC3H7A A G 0.5561 5.48 × 10−6
rs180931486 MBP T C 0.9334 6.21 × 10−6
rs536504 RASGEF1B C G 0.6995 6.79 × 10−6
rs17744447 CACNA2D3 A G 0.3458 7.86 × 10−6
rs567697 RNU6–83 T C 0.8451 8.09 × 10−6
rs76088896 NPJP1 T C 0.8925 8.66 × 10−6
rs13257626 MSC G T 0.9769 9.06 × 10−6
rs570456 ALG8 C T 0.7392 9.23 × 10−6
rs117574193 CDH11 G A 0.9750 9.63 × 10−6
rs10773937 IQSEC3 G C 0.4928 9.86 × 10−6
rs58200410 C1D C A 0.9545 1.02 × 10−5
rs7786342 THSD7A C A 0.6497 1.08 × 10−5
rs12450972 DCAKD C T 0.5978 1.21 × 10−5
rs609952 NDUFC2 C T 0.8459 1.43 × 10−5
rs75277622 RIN3 C T 0.9361 1.63 × 10−5
rs112680866 TM2D3 A T 0.9749 1.67 × 10−5
rs143236826 TLE4 A C 0.9342 1.67 × 10−5
rs61863283 HOGA1 G A 0.7112 1.75 × 10−5
rs13389043 MYEOV2 T G 0.8353 1.79 × 10−5
rs56277520 FZD10 G A 0.5515 1.82 × 10−5
rs7767783 RIMS1 T C 0.6306 1.86 × 10−5
rs140245790 TXNL1 A G 0.9792 1.96 × 10−5
rs655445 NDUFC2-KCTD14 G A 0.8484 1.97 × 10−5
rs11160142 PRTMA1 A G 0.6436 2.38 × 10−5