Table 2.
Top 35 Non-Hispanic White GWAS Results. SNPs are the top hit SNPs from the GWAS analysis. Nearest gene is the annotated nearest gene to the SNP. Many SNPs were closest to the same gene. The table omits the duplicate genes to show unique annotated top genes. A1 is effect allele. A2 is other allele. MAF is the frequency of A1.
SNP | Nearest Gene | Al | A2 | MAF | P-Value |
---|---|---|---|---|---|
rs6487668 | PZP | C | A | 0.2181 | 7.06 × 10−7 |
rs35426224 | EML1 | G | A | 0.9255 | 1.07 × 10−6 |
rs734152 | FAM222A-AS1 | G | C | 0.8804 | 1.13 × 10−6 |
rs12036147 | CHRM3 | A | T | 0.9116 | 1.28 × 10−6 |
rs79309730 | SH3BP4 | C | T | 0.9427 | 1.70 × 10−6 |
rs7298108 | A2MP1 | C | T | 0.8217 | 2.01 × 10−6 |
rs17118176 | MDGA2 | A | G | 0.9373 | 3.52 × 10−6 |
rs6485603 | SYT13 | G | A | 0.5506 | 4.76 × 10−6 |
rs143756124 | MC5R | T | C | 0.9320 | 4.90 × 10−6 |
rs6743806 | SCG2 | C | G | 0.7326 | 5.08 × 10−6 |
rs13171357 | SLC1A3 | G | A | 0.7185 | 5.27 × 10−6 |
rs7194099 | ZC3H7A | A | G | 0.5561 | 5.48 × 10−6 |
rs180931486 | MBP | T | C | 0.9334 | 6.21 × 10−6 |
rs536504 | RASGEF1B | C | G | 0.6995 | 6.79 × 10−6 |
rs17744447 | CACNA2D3 | A | G | 0.3458 | 7.86 × 10−6 |
rs567697 | RNU6–83 | T | C | 0.8451 | 8.09 × 10−6 |
rs76088896 | NPJP1 | T | C | 0.8925 | 8.66 × 10−6 |
rs13257626 | MSC | G | T | 0.9769 | 9.06 × 10−6 |
rs570456 | ALG8 | C | T | 0.7392 | 9.23 × 10−6 |
rs117574193 | CDH11 | G | A | 0.9750 | 9.63 × 10−6 |
rs10773937 | IQSEC3 | G | C | 0.4928 | 9.86 × 10−6 |
rs58200410 | C1D | C | A | 0.9545 | 1.02 × 10−5 |
rs7786342 | THSD7A | C | A | 0.6497 | 1.08 × 10−5 |
rs12450972 | DCAKD | C | T | 0.5978 | 1.21 × 10−5 |
rs609952 | NDUFC2 | C | T | 0.8459 | 1.43 × 10−5 |
rs75277622 | RIN3 | C | T | 0.9361 | 1.63 × 10−5 |
rs112680866 | TM2D3 | A | T | 0.9749 | 1.67 × 10−5 |
rs143236826 | TLE4 | A | C | 0.9342 | 1.67 × 10−5 |
rs61863283 | HOGA1 | G | A | 0.7112 | 1.75 × 10−5 |
rs13389043 | MYEOV2 | T | G | 0.8353 | 1.79 × 10−5 |
rs56277520 | FZD10 | G | A | 0.5515 | 1.82 × 10−5 |
rs7767783 | RIMS1 | T | C | 0.6306 | 1.86 × 10−5 |
rs140245790 | TXNL1 | A | G | 0.9792 | 1.96 × 10−5 |
rs655445 | NDUFC2-KCTD14 | G | A | 0.8484 | 1.97 × 10−5 |
rs11160142 | PRTMA1 | A | G | 0.6436 | 2.38 × 10−5 |