Table 1.

Quality and quantity of the sequencing data

Sample ID	Total No. of reads	Mapped reads, n/%	Duplicate reads, n/%	Genome coverage (mean)	Mapping quality
P1_PC	848,047,506	808,804,115/95.37	68,671,081/8.10	37.89	54.01
P1_CRPC	948,133,472	906,103,176/95.57	261,605,851/27.59	42.86	54.05
P2_PC	850,014,794	812,799,767/95.62	132,111,659/15.54	38.24	54.10
P2_CRPC	1,119,621,752	1,074,841,222/96.00	178,460,836/15.94	50.85	54.32
P3_PC	873,087,626	831,226,978/95.21	219,433,437/25.13	39.29	54.05
P3_CRPC	1,217,525,626	1,164,525,389/95.65	182,382,654/14.98	53.54	53.79
P4_PC	740,468,590	703,382,210/94.99	138,235,516/18.67	31.81	53.21
P4_CRPC	915,523,140	875,358,078/95.40	215,503,940/23.49	41.39	54.03