Table 2.
The significant SNPs and those-containing genes associated with BF after FDR correction
| Chr | SNP | Base pair | Beta | FDR | Gene |
|---|---|---|---|---|---|
| 1 | ALGA0003992 | 74,391,668 | 0.5628 | 0.0010 | AFG1L |
| 1 | ALGA0006854 | 185,048,329 | 0.5478 | 0.0016 | |
| 1 | ALGA0003716 | 65,086,290 | 0.4237 | 0.0027 | |
| 1 | ALGA0003091 | 52,127,592 | 0.7812 | 0.0029 | RIMS1 |
| 7 | ASGA0032161 | 30,521,413 | 0.6079 | 0.0029 | SPDEF |
| 1 | CASI0007774 | 71,401,555 | 0.4248 | 0.0029 | |
| 1 | H3GA0001881 | 71,455,634 | 0.4248 | 0.0029 | |
| 1 | DRGA0002197 | 265,831,621 | 0.3553 | 0.0069 | SCAI |
| 1 | MARC0031246 | 231,303,178 | 0.4662 | 0.0072 | |
| 7 | ASGA0031143 | 10,707,229 | −0.3348 | 0.0072 | |
| 9 | ALGA0104955 | 33,658,036 | −0.348 | 0.0076 | |
| 13 | MARC0056987 | 206,756,876 | 0.3341 | 0.0084 | |
| 7 | ASGA0031992 | 27,352,011 | 0.3849 | 0.0097 |
Most of the significant SNPs belonged to chromosome 1.
SNP, single nucleotide polymorphism; BF, backfat thickness; FDR, false discovery rate; AFG1L, AFG1 like ATPase; RIMS1, regulating synaptic membrane exocytosis 1; SPDEF, SAM pointed domain containing ETS transcription factor; SCAI, suppressor of cancer cell invasion.