Table 3.
Enriched Gene Ontology (GO) terms among the root- and the nodule-enhanced core MergedOrthoGroups that are shared across the three species.
| GO ID | GO term | P-value (C. thyrsiflorus) | P-value (D. glomerata) | P-value (M. truncatula) |
|---|---|---|---|---|
| (A) Nodule-enhanced GO terms shared across the three species. | ||||
| GO:0009690 | Cytokinin metabolic process | 4.9.E-05 | 2.5.E-04 | 4.2.E-04 |
| GO:0015706 | Nitrate transport | 5.8.E-05 | 2.3.E-03 | 3.0.E-03 |
| GO:0034754 | Cellular hormone metabolic process | 2.0.E-04 | 4.4.E-04 | 1.1.E-03 |
| GO:0015698 | Inorganic anion transport | 4.0.E-04 | 2.9.E-03 | 5.4.E-03 |
| GO:0006820 | Anion transport | 4.2.E-04 | 5.9.E-04 | 2.1.E-04 |
| GO:0042445 | Hormone metabolic process | 8.1.E-04 | 3.8.E-04 | 1.1.E-03 |
| GO:0010817 | Regulation of hormone levels | 3.4.E-03 | 2.8.E-03 | 4.5.E-03 |
| GO:0010028 | Xanthophyll cycle | 3.8.E-03 | 1.8.E-05 | 1.6.E-05 |
| GO:0015882 | L-Ascorbic acid transport | 3.8.E-03 | 1.8.E-05 | 1.6.E-05 |
| GO:0033397 | Zeatin metabolic process | 3.8.E-03 | 1.8.E-05 | 1.6.E-05 |
| GO:0033398 | Zeatin biosynthetic process | 3.8.E-03 | 1.8.E-05 | 1.6.E-05 |
| GO:0033400 | Trans-zeatin metabolic process | 3.8.E-03 | 1.8.E-05 | 1.6.E-05 |
| GO:0033466 | Trans-zeatin biosynthetic process | 3.8.E-03 | 1.8.E-05 | 1.6.E-05 |
| GO:0010101 | Post-embryonic root morphogenesis | 6.7.E-03 | 9.2.E-04 | 1.3.E-03 |
| GO:0010102 | Lateral root morphogenesis | 0.00665 | 0.00092 | 0.00132 |
| GO:0051180 | Vitamin transport | 0.00767 | 0.000054 | 0.00019 |
| (B) Root-enhanced GO terms shared across the three species. | ||||
| GO:1901334 | Lactone metabolic process | 1.4.E-06 | 4.3.E-07 | 5.7.E-11 |
| GO:1901336 | Lactone biosynthetic process | 1.4.E-06 | 4.3.E-07 | 5.7.E-11 |
| GO:1901600 | Strigolactone metabolic process | 1.4.E-06 | 4.3.E-07 | 5.7.E-11 |
| GO:1901601 | Strigolactone biosynthetic process | 1.4.E-06 | 4.3.E-07 | 5.7.E-11 |
| GO:0034756 | Regulation of iron ion transport | 2.8.E-06 | 3.4.E-04 | 1.4.E-04 |
| GO:0071732 | Cellular response to nitric oxide | 2.8.E-06 | 5.9.E-06 | 1.4.E-09 |
| GO:1902170 | Cellular response to reactive nitrogen species | 2.8.E-06 | 1.3.E-05 | 5.8.E-09 |
| GO:0071281 | Cellular response to iron ion | 3.9.E-06 | 4.5.E-03 | 2.5.E-04 |
| GO:0071731 | Response to nitric oxide | 4.8.E-06 | 8.8.E-06 | 5.8.E-09 |
| GO:0010039 | Response to iron ion | 9.6.E-06 | 6.4.E-03 | 4.3.E-04 |
| GO:0010223 | Secondary shoot formation | 6.1.E-05 | 3.7.E-05 | 2.6.E-08 |
| GO:0010346 | Shoot axis formation | 6.1.E-05 | 3.7.E-05 | 2.6.E-08 |
| GO:0071241 | Cellular response to inorganic substance | 6.1.E-05 | 1.2.E-03 | 4.9.E-07 |
| GO:0001763 | Morphogenesis of a branching structure | 1.1.E-04 | 6.9.E-05 | 3.7.E-08 |
| GO:0010959 | Regulation of metal ion transport | 1.5.E-04 | 2.3.E-03 | 2.8.E-03 |
| GO:0042445 | Hormone metabolic process | 2.7.E-04 | 4.2.E-05 | 3.1.E-03 |
| GO:0034614 | Cellular response to reactive oxygen species | 9.5.E-04 | 4.4.E-04 | 3.6.E-07 |
| GO:0016106 | Sesquiterpenoid biosynthetic process | 1.9.E-03 | 3.7.E-05 | 2.1.E-08 |
| GO:0006714 | Sesquiterpenoid metabolic process | 0.00242 | 0.000069 | 0.00000012 |
| GO:1905393 | Plant organ formation | 0.00271 | 0.00484 | 0.000056 |
| GO:0006812 | Cation transport | 0.00378 | 0.00605 | 0.00175 |
| GO:0055114 | Oxidation–reduction process | 0.00409 | 0.00986 | 0.00451 |
| GO:0071369 | Cellular response to ethylene stimulus | 0.00433 | 0.00404 | 0.00015 |
| GO:0016114 | Terpenoid biosynthetic process | 0.00457 | 0.00056 | 0.0000089 |
| GO:0034599 | Cellular response to oxidative stress | 0.0057 | 0.0026 | 0.0000052 |
| GO:0055085 | Transmembrane transport | 0.00588 | 0.0012 | 0.00216 |
| GO:0006811 | Ion transport | 0.00659 | 0.00782 | 0.00047 |
| GO:0006721 | Terpenoid metabolic process | 0.00659 | 0.00099 | 0.000017 |