Table 3.
Correlation of mRNA expression of genes identified by COMPARE analysis with log10IC50 values of bromocriptine for 60 NCI tumor cell linesa.
COMPARE coefficient | Pattern ID | GeneBank accession | Gene symbol | Gene name | Gene function |
---|---|---|---|---|---|
0.642 | GC38764 | X60489 | EEF1B2 | Eukaryotic translation elongation factor 1β2 | Stimulates the exchange of GDP bound to EF1α to GTP. |
0.640 | GC39380 | U09953 | RPL9 | Ribosomal protein L9 | ribosomal protein L9 |
0.627 | GC35297 | M31520 | RPS24 | Ribosomal protein S24 | Required for processing of pre-rRNA and maturation of 40S ribosomal subunits |
0.622 | GC33697 | M84711 | RPS3A | Ribosomal protein S3A | Role during erythropoiesis by regulation of transcription factor DDIT3 |
0.616 | GC29122 | AF054183 | RAN | RAN, member RAS oncogene family | Mediation of nucleocytoplasmic protein and ribonucleoprotein transport |
0.612 | GC36652 | L38941 | RPL34 | Ribosomal protein L34 | 60S ribosomal protein L34 |
0.604 | GC34926 | X79563 | RPS21 | Ribosomal protein S21 | 40S ribosomal protein S21, 9 kDa |
0.598 | GC37574 | S79522 | RPS27A | Ribosomal protein S27a | 60S ribosomal protein S27A. Component of the 40S subunit of the ribosome |
0.596 | GC30163 | AF054187 | NACA | Nascent polypeptide-associated complex α subunit | Regulation of myotube development. Role in ventricular cardiomyocyte expansion and postnatal skeletal muscle growth and regeneration |
0.593 | GC37319 | W52024 | RPS15A | Ribosomal protein S15a | 60S ribosomal protein S15A |
0.592 | GC34223 | M14199 | RPSA | Ribosomal protein SA | Required for the assembly and stability of the 40S ribosomal subunit. Cell surface receptor for laminin. Cell adhesion to the basement membrane and activation of signaling transduction |
0.590 | GC36135 | X99226 | FANCA | Fanconi anemia, complementation group A | Interstrand DNA cross-link repair and maintenance of chromosome stability |
0.585 | GC28763 | AF016371 | PPIH | Peptidylprolyl isomerase H (cyclophilin H) | Protein folding |
0.576 | GC30155 | Z23064 | RBMX | RNA binding motif protein, X-linked | Regulation of gene transcription and alternative splicing of several pre-mRNAs |
0.575 | GC29002 | M14630 | PTMA | Prothymosin α | Mediation of immunological resistance to certain opportunistic infections |
0.574 | GC34930 | X69391 | RPL6 | Ribosomal protein L6 | Specifically binds to domain C of the tax-responsive enhancer element in the long terminal repeat of HTLV-I |
0.571 | GC27651 | AB007191 | MYCBP | C-myc binding protein | May control the transcriptional activity of MYC. Stimulates the activation of E box-dependent transcription by MYC |
0.571 | GC29848 | T79616 | UQCRB | Ubiquinol-cytochrome c reductase binding protein | A component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain |
0.570 | GC35323 | U37230 | RPL23A | Ribosomal protein L23a | Binds 26S rRNA |
0.567 | GC35222 | TARDBP | AL050265 | TAR DNA binding protein | DNA and RNA-binding protein regulating transcription and splicing |
-0.612 | GC33001 | U11872 | CXCR2 | Chemokine (C-X-C motif) receptor 2 | IL8 receptor activating neutrophils |
-0.546 | GC35931 | X13255 | DBH | Dopamine β-hydroxylase (dopamine β-monooxygenase) | Activity is enhanced by nerve growth factor |
-0.545 | GC27591 | D87463 | PHYHIP | Phytanoyl-CoA 2-hydroxylase interacting protein | Role in the development of the central system |
-0.544 | GC28151 | U15780 | ST5 | Suppression of tumorigenicity 5 | Guanine nucleotide exchange factor (GEF) activating RAB9A and RAB9B |
-0.516 | GC31384 | AF035812 | DYNC1LI2 | Dynein, cytoplasmic 1, light intermediate chain 2 | Component of the cytoplasmic dynein 1 complex that is involved cargo transport |
-0.495 | GC29420 | Z50022 | PTTG1IP | Pituitary tumor-transforming 1 interacting protein | Facilitates PTTG1 nuclear translocation by transcription factor RUNX2 |
-0.479 | GC30117 | W27517 | TMEM109 | Transmembrane protein 109 | DNA damage response. Protection against ultraviolet C-induced cell death |
-0.476 | GC38293 | M33680 | CD81 | Cluster of differentiation molecule 81 | Signal transducer. Viral receptor for HCV |
-0.476 | GC29175 | AA487755 | FKBP9 | FK506 binding protein 9, 63 kDa | Protein folding during protein synthesis |
-0.476 | GC36401 | AB023151 | DIP2C | DIP2 disco-interacting protein 2 homologue C (Drosophila) | Transcription factor binding |
-0.474 | GC31394 | AB011171 | PLEKHG3 | Pleckstrin homology domain containing, family G (with RhoGef domain) member 3 | Rho guanyl-nucleotide exchange factor |
-0.474 | GC38796 | AF035292 | OBSL1 | Obscurin-like 1 | Role in the ubiquitin ligase pathway that regulates Golgi morphogenesis and dendrite patterning in brain |
-0.473 | GC33621 | Y00285 | IGF2R | Insulin-like growth factor 2 receptor | Transport of phosphorylated lysosomal enzymes from Golgi complex and cell surface to lysosomes |
-0.472 | GC36838 | R48209 | FAM214B | Family with sequence similarity 214 member B | Function unknown |
-0.470 | GC35831 | AF104913 | EIF4G1 | Eukaryotic translation initiation factor 4γ1 | Component of the eIF4F complex, which is involved in the recruitment of mRNA to the ribosome |
-0.469 | GC32200 | AL096879 | TMEM184B | Transmembrane protein 184B | Activation of MAP kinase signaling |
-0.467 | GC31388 | S80562 | CNN3 | Calponin 3, acidic | Thin filament-associated protein modulating smooth muscle contraction. Binds actin, calmodulin, troponin C, and tropomyosin |
-0.465 | GC32482 | M31724 | PTPN1 | Protein tyrosine phosphatase, non-receptor type 1 | Role in CKII- and p60c-src-induced signal transduction cascades. Regulation of EFNA5-EPHA3 signaling, which modulates cell reorganization and cell-cell repulsion. Regulation of hepatocyte growth factor receptor signaling by MET dephosphorylation |
-0.461 | GC32085 | AB018333 | SASH1 | SAM and SH3 domain containing 1 | Signal transducer, tumor suppressor |
-0.459 | GC32336 | X07767 | PRKACA | Protein kinase, cAMP-dependent, catalytic, α | Phosphorylation of cytoplasmic and nuclear proteins |
aPositive correlation coefficients indicated direct correlations to log10 IC50 values; negative ones indicated inverse correlations. Information on gene functions was taken from the OMIM database, NCI, United States (http://www.ncbi.nlm.nih.gov/Omim/) and from the GeneCard database of the Weizman Institute of Science, Rehovot Israel (https://www.genecards.org/).