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. 2018 Oct 15;13(10):e0205668. doi: 10.1371/journal.pone.0205668

Table 1. Comprehensive details of the finger millet candidate reference genes, primer sequences, amplicon size, melting temperature (Mt), amplification efficiency (E); regression coefficient (R2), coefficient of variation (CV).

Ah—Arachis hypogaea; Ca—Cicer arietinum; Ec—Eleusine coracana; Pg- Pennisetum glaucum, Sb- Sorghum bicolor.

S. No Gene Name Source/Acc No. Primer sequence F / R (5'-3') Amplicon Size (bp) Mt E R2 Average Cq CV (%)
1 ACT Actin Ec/HE800188 ATGAGGCCCAGTCCAAGAGA 168 84 1.03 0.997 24.44 8.17
GGTTCAAAGGGGCTTCAGTG
2 CYP Cyclophilin Pg/KM105955 TACAAGGGGTCGAGCTTCCAC 104 89.7 1.08 0.922 27.02 5.0
TTCTCGCCGTAGATGGACTCC
3 EIF4α Eukaryotic Initiation factor 4A Ca/XM_004513380 AGTCACTTCGGCCAGATTACAT 137 84.6 1.01 0.994 21.21 8.42
AGCAGAGAAAACTCCCACTTGA
4 EF1α Elongation factor 1-alpha Ec/HQ202576 GCATGCTCTCCTTGCTTTCA 102 82.7 1.02 0.968 19.91 7.36
TACTTGGGTGTGGTGGCATC
5 GAPDH Glyceraldehyde-3-phosphate dehydrogenase Pg/GQ398107 TGCCTTGCTCCCCTTGCTAA 139 84.6 0.96 0.991 19.57 9.95
CAGCCCTTCCACCTCTCCAG
6 G6PD Glucose-6-phosphate 1-dehydrogenase Ac/EG030635 ACCATTCCAGAGGCTTATGAGC 151 82.5 0.93 0.999 27.93 2.88
AAGGGAGTGACTTGAACTCTCC
7 MACP MalonylCoA-Acyl Carrier protein Sb/XM_002465363 GCATTGAGAACATCGGGGCTT 139 84.6 1.00 0.996 26.51 6.95
ATGAGTGGAAACTTCGTTCCA
8 MDH Malate dehydrogenase Sb/XM_002467034 TGCAGTGGTGGTGAATGGAA 103 83.7 1.01 0.994 26.61 8.04
GCGTCTTCTCTTCCGACAGC
9 S24 40S ribosomal protein Pg/KM105960 CCCCAGGAAGTGCTCTGCTA 158 86.1 0.97 0.987 25.79 7.36
CATCAGCGTCACCCTGAGCA
10 PP2A Serine/threonine-Protein Phosphatase Ec/KT824869 GATCGCGTCCAAGAAGTTCC 109 83.1 0.98 0.996 24.32 7.97
AAGTGTAGCCAGCACCACGA
11 PT Phosphate transporter protein Ec/KJ842585 GGCCTCTTCTCCCAGGAGTT 128 87.8 0.95 0.928 29.11 5.56
TTGATGGCCGTGAAGATGTC
12 S21 Ribosomal protein Ec-KC894816 ACTTCTACCCCGAGCACACG 152 84.4 0.97 0.994 15.27 13.96
CGCTTATGACCTCCCCCTCT
13 TFIID Transcription initiation factor Ec-KT824872 ACCATGGATGGGTTCTCCAC 163 86.1 0.98 0.959 21.1 7.13
GATCCTCCTTCCATGCTTGC
14 TIP41 Tonoplast intrinsic proteins -like protein Ca/XM_004496854 GTTGTACTTCGGGAGAGTTGCT 115 83 0.95 0.956 30.33 2.47
GGAGCTTCTGGCTTATGATGCT
15 β-TUB Beta Tubulin Pg/KM105955 CACCTCCATCCAGGAGATGTT 167 87.4 0.87 0.999 23.21 3.3
GGTGAACTCCATCTCGTCCA
16 UBC Ubiquitin Protein Isoform C Pg/CD724586 TTCAAACCTCCGAAGGTGTCTT 100 81.7 0.88 0.998 23.26 6.07
GGCTCCACTGCTCTTTAAGAATG