Table 1. Comprehensive details of the finger millet candidate reference genes, primer sequences, amplicon size, melting temperature (Mt), amplification efficiency (E); regression coefficient (R2), coefficient of variation (CV).
Ah—Arachis hypogaea; Ca—Cicer arietinum; Ec—Eleusine coracana; Pg- Pennisetum glaucum, Sb- Sorghum bicolor.
S. No | Gene | Name | Source/Acc No. | Primer sequence F / R (5'-3') | Amplicon Size (bp) | Mt | E | R2 | Average Cq | CV (%) |
---|---|---|---|---|---|---|---|---|---|---|
1 | ACT | Actin | Ec/HE800188 | ATGAGGCCCAGTCCAAGAGA | 168 | 84 | 1.03 | 0.997 | 24.44 | 8.17 |
GGTTCAAAGGGGCTTCAGTG | ||||||||||
2 | CYP | Cyclophilin | Pg/KM105955 | TACAAGGGGTCGAGCTTCCAC | 104 | 89.7 | 1.08 | 0.922 | 27.02 | 5.0 |
TTCTCGCCGTAGATGGACTCC | ||||||||||
3 | EIF4α | Eukaryotic Initiation factor 4A | Ca/XM_004513380 | AGTCACTTCGGCCAGATTACAT | 137 | 84.6 | 1.01 | 0.994 | 21.21 | 8.42 |
AGCAGAGAAAACTCCCACTTGA | ||||||||||
4 | EF1α | Elongation factor 1-alpha | Ec/HQ202576 | GCATGCTCTCCTTGCTTTCA | 102 | 82.7 | 1.02 | 0.968 | 19.91 | 7.36 |
TACTTGGGTGTGGTGGCATC | ||||||||||
5 | GAPDH | Glyceraldehyde-3-phosphate dehydrogenase | Pg/GQ398107 | TGCCTTGCTCCCCTTGCTAA | 139 | 84.6 | 0.96 | 0.991 | 19.57 | 9.95 |
CAGCCCTTCCACCTCTCCAG | ||||||||||
6 | G6PD | Glucose-6-phosphate 1-dehydrogenase | Ac/EG030635 | ACCATTCCAGAGGCTTATGAGC | 151 | 82.5 | 0.93 | 0.999 | 27.93 | 2.88 |
AAGGGAGTGACTTGAACTCTCC | ||||||||||
7 | MACP | MalonylCoA-Acyl Carrier protein | Sb/XM_002465363 | GCATTGAGAACATCGGGGCTT | 139 | 84.6 | 1.00 | 0.996 | 26.51 | 6.95 |
ATGAGTGGAAACTTCGTTCCA | ||||||||||
8 | MDH | Malate dehydrogenase | Sb/XM_002467034 | TGCAGTGGTGGTGAATGGAA | 103 | 83.7 | 1.01 | 0.994 | 26.61 | 8.04 |
GCGTCTTCTCTTCCGACAGC | ||||||||||
9 | S24 | 40S ribosomal protein | Pg/KM105960 | CCCCAGGAAGTGCTCTGCTA | 158 | 86.1 | 0.97 | 0.987 | 25.79 | 7.36 |
CATCAGCGTCACCCTGAGCA | ||||||||||
10 | PP2A | Serine/threonine-Protein Phosphatase | Ec/KT824869 | GATCGCGTCCAAGAAGTTCC | 109 | 83.1 | 0.98 | 0.996 | 24.32 | 7.97 |
AAGTGTAGCCAGCACCACGA | ||||||||||
11 | PT | Phosphate transporter protein | Ec/KJ842585 | GGCCTCTTCTCCCAGGAGTT | 128 | 87.8 | 0.95 | 0.928 | 29.11 | 5.56 |
TTGATGGCCGTGAAGATGTC | ||||||||||
12 | S21 | Ribosomal protein | Ec-KC894816 | ACTTCTACCCCGAGCACACG | 152 | 84.4 | 0.97 | 0.994 | 15.27 | 13.96 |
CGCTTATGACCTCCCCCTCT | ||||||||||
13 | TFIID | Transcription initiation factor | Ec-KT824872 | ACCATGGATGGGTTCTCCAC | 163 | 86.1 | 0.98 | 0.959 | 21.1 | 7.13 |
GATCCTCCTTCCATGCTTGC | ||||||||||
14 | TIP41 | Tonoplast intrinsic proteins -like protein | Ca/XM_004496854 | GTTGTACTTCGGGAGAGTTGCT | 115 | 83 | 0.95 | 0.956 | 30.33 | 2.47 |
GGAGCTTCTGGCTTATGATGCT | ||||||||||
15 | β-TUB | Beta Tubulin | Pg/KM105955 | CACCTCCATCCAGGAGATGTT | 167 | 87.4 | 0.87 | 0.999 | 23.21 | 3.3 |
GGTGAACTCCATCTCGTCCA | ||||||||||
16 | UBC | Ubiquitin Protein Isoform C | Pg/CD724586 | TTCAAACCTCCGAAGGTGTCTT | 100 | 81.7 | 0.88 | 0.998 | 23.26 | 6.07 |
GGCTCCACTGCTCTTTAAGAATG |