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. 2018 Oct 15;8:15251. doi: 10.1038/s41598-018-33266-5

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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MVSTm prophage region alignment. Alignment of 42.9Kb prophage region of STY194 strain (in the middle) including 62 loci of which 33 (yellow) are that classified by Scoary³⁸ as strongly associated with Italian MVSTm (group 2 in the text). At the top, S. Typhimurium LT2 showing the insertion of the prophage between the tRNA-thrW locus downstream of proA and the transposase STM0325. At the bottom, similar prophage region of UK strain SAL_JA6411AA with divergent loci coloured in grey. The full match of shared loci (orange and magenta arrows) is showed in blue.