Table 1.
Oligonucleotide probes used for fluorescence in situ hybridization (FISH) and bacterial quantification
| Probe | Target | Sequence (5' → 3') |
|---|---|---|
| Eub338 | Eubacteria | GCT GCC TCC CGT AGG AGT |
| Erec482 | Clostridium coccoides‐E. rectale cluster | GCT TCT TAG TCA RGT ACC G |
| Ebac1790 | Enterobacteriaceae | CGT GTT TGC ACA GTG CTG |
| Bacto1080 | Bacteroides spp.Prevotella spp. | GCA CTT AAG CCG ACA CCT |
| Hel717 | Helicobacter spp. | AGG TCG CCT TCG CAA TGA GTA |
| Faecali698 | Faecalibacterium spp. | GTG CCC AGT AGG CCG CCT TC |
| Fuso0664 | Fusobacterium spp. | CTT GTA GTT CCG CYT ACC TC |