Table 3.
P-values for top OTU associations with Cohort, Season, or Sample Period.
| OTU | P-value | ||
|---|---|---|---|
| Cohort | Season | Sample period | |
| p_Bacteroidetes | * | **** | *** |
| g_Enhydrobacter | * | ** | * |
| g_Acinetobacter | * | * | * |
| g_Staphylococcus | **** | * | * |
| g_Janthinobacterium | * | * | * |
| g_Corynebacterium | * | **** | ** |
| f_Ellin6075 | * | **** | ** |
| g_Fibrobacter | * | **** | * |
| g_Knoellia | ** | ** | ** |
| g_Cupriavidus | * | ** | *** |
| g_Pantoea | * | * | * |
| g_Arthrobacter | * | **** | * |
| f_Aerococcaceae | *** | *** | * |
| g_Aerococcus | * | * | ** |
| g_Coxiella | **** | * | * |
| f_Rhodocyclaceae | * | **** | **** |
| o_Solibacterales | * | *** | * |
| g_Brevundimonas | * | ** | * |
| g_Psychrobacter | * | * | * |
| g_Burkholderia | * | * | * |
P > 0.05.
0.05 ≥ P > 0.01.
0.01 ≥ P > 0.001.
P ≤ 0.001.
Cohort, Healthy, Quarters (n = 80) that had culture-negative milk with SCC < 100,000 cells/mL at DR, C1, and C2; CHRON, Quarters (n = 17) that had culture-negative milk samples with SCC ≥ 150,000 cells/mL at DR and C1; NEWINF, Quarters (n = 6) that had new culture-negative inflammation with variable DR milk sample results and culture-negative milk samples with SCC ≥ 150,000 cells/mL at C1 and C2; POS, Quarters (n = 3) that had bacterial growth in culture and SCC ≥ 150,000 cells/mL at DR, C1, and C2; Sampling periods, DR, dryoff, C1, first week of lactation, C2, second week of lactation, M2, second month of lactation, M3, third month of lactation, M4, fourth month of lactation, M5, fifth month of lactation.