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. Author manuscript; available in PMC: 2019 Oct 9.
Published in final edited form as: Biochemistry. 2018 Sep 25;57(40):5864–5876. doi: 10.1021/acs.biochem.8b00783

Table 1:

X-ray data collection and refinement statistics for tmMBPs

tmMBP1-MTT apo tmMBP2 tmMBP2-MTT apo tmMBP3 tmMBP3-MAL
PDB ID 6DTU 6DTT 6DTS 6DTR 6DTQ
Data collection
Resolution range (Å) 50.0 – 1.5
(1.55 – 1.50)
30.0 – 1.9
(1.97 – 1.90)
50.0 – 1.5
(1.54 – 1.50)
40.0 – 2.3
(2.38 – 2.30)
40.0 – 2.1
(2.23 – 2.15)
Space group P 1 P 21 21 21 P 1 C 2 2 21 P 21 21 21
Unit cell
a, b and c (Å) 34.6, 55.4, 93.5 78.9, 91.0, 100.2 35.4, 56.1, 88.3 65.5, 137.4, 145.0 82.3, 124, 174.8
 α, β, and γ (°) 96.8, 93.6, 101.9 90.0, 90.0, 90.0 89.5, 84.6, 89.6 90.0, 90.0, 90.0 90.0, 90.0, 90.0
Unique reflections 90224 55922 98262 27256 93556
Multiplicity* 2.1 (2.1) 3.0 (2.8) 1.9 (1.9) 2.4 (2.3) 3.2 (2.9)
Completeness (%) 83.4 (83.3) 97.1 (98.3) 90.3 (85.4) 92.5 (92.4) 95.2 (88.5)
R-merge 0.077 (0.464) 0.056 (0.472) 0.036 (0.125) 0.129 (0.641) 0.086 (0.497)
Mean I/σ(I) 8.3 (3.0) 16.8 (2.3) 19.7 (7.1) 7.6 (2.0) 11.2 (2.1)
Wilson B-factor 16.99 26.62 18.53 40.09 28.14
Refinement
Reflections used in refinement 90177 55874 98260 27237 93498
Reflections used for R-free 1999 2000 1969 1363 4624
R-work 0.205 (0.304) 0.193 (0.280) 0.169 (0.203) 0.164 (0.283) 0.174 (0.280)
R-free 0.227 (0.318) 0.234 (0.331) 0.191 (0.225) 0.193 (0.319) 0.205 (0.332)
Number of non-hydrogen atoms in refinement
 macromolecules 5930 5854 5891 3145 12526
 ligands 90 0 90 5 96
 solvent 524 389 730 88 514
RMS Bond length (Å) 0.007 0.006 0.013 0.004 0.002
RMS Bond angle (°) 0.9 0.8 1.2 0.7 0.6
Ramachandran allowed (%) 0.8 1.7 0.7 2.8 1.5
Ramachandran outliers (%) 0.0 0.1 0.0 0.0 0.0
Ramachandran favored (%) 99.2 98.2 99.3 97.2 98.5
Clashscore 3.5 2.5 3.1 4.4 2.2
Average B-factor 20 28 21 48 31
 macromolecules 20 28 21 48 31
 ligands 16 N/A 17 44 19
 solvent 26 33 29 46 33
a

Number in parentheses represent values in the highest resolution shell