Table 3.
Genomic regions associated with head size in Yellow River carp.
| Traits | QTL name | LG | CI(cM) | No. of SNPs SNP | Nearest marker | LOD | Permutation | PVE(%) |
|---|---|---|---|---|---|---|---|---|
| HL | HL8 | 8 | 13.02–20.25 | 17 | snp061215 | 4.37 | 4.2 | 17.4 |
| HL15 | 15 | 29.95–37.31 | 29 | snp126970 | 6.25 | 3.9 | 51.0 | |
| HL34 | 34 | 57.63–57.73 | 1 | snp010428 | 4.21 | 4.2 | 23.7 | |
| HBR | HBR3 | 3 | 55.53–56.39 | 7 | snp077514 | 4.24 | 4.1 | 15.3 |
| HBR5 | 5 | 237.63–238.43 | 4 | snp173532 | 4.57 | 4.4 | 13.3 | |
| HBR8 | 8 | 110.97–111.27 | 7 | snp013043 | 4.63 | 4.3 | 20.7 | |
| HBR9 | 9 | 57.64–58.34 | 1 | snp177679 | 4.41 | 4.2 | 51 | |
| HBR15 | 15 | 30.91–37.31 | 28 | snp005551 | 4.63 | 3.9 | 45.8 | |
| HBR32 | 32 | 123.99–125.19 | 7 | snp158230 | 4.38 | 3.9 | 21 | |
| HBR42a | 42 | 88.69–88.99 | 2 | snp202763 | 4.03 | 4.0 | 20.6 | |
| HBR42b | 42 | 89.63–91.73 | 5 | snp061684 | 4.22 | 4.0 | 20.8 | |
| ED | ED11a | 11 | 150.52–152.87 | 8 | snp218634 | 4.08 | 3.7 | 13.4 |
| ED38 | 38 | 34.11–35.88 | 1 | snp078442 | 4.1 | 3.6 | 24.2 | |
| ED38 | 38 | 37.27–39.9 | 14 | snp214871 | 3.84 | 3.6 | 19.8 | |
| EC | EC12 | 12 | 121.07–121.43 | 1 | snp094164 | 3.63 | 3.6 | 13.5 |
| EC14 | 14 | 23.71–25.01 | 12 | snp014385 | 4.03 | 3.9 | 15 | |
| EC41 | 41 | 187.64–189.06 | 1 | snp020906 | 4.63 | 3.9 | 21.4 | |
| EC50 | 50 | 159.89–166.59 | 6 | snp175214 | 4.23 | 3.9 | 15.2 |
HL, head length; HBR, head length/body length ratio; ED, eye diameter; EC, eye cross. PVE, phenotypic variance explained.