Table 5.
Summary of candidate genes from QTLs for head size in Yellow River carp.
| Traits | QTL | LG | Gene name | Gene start | Gene end | Annotation |
|---|---|---|---|---|---|---|
| HL | HL8 | 8 | mGluR8 | 2862631 | 2924019 | Metabotropic glutamate receptor 8 |
| HL15 | 15 | igf3 | 6453808 | 6456799 | Insulin-like growth factor 3 | |
| nras | 3772910 | 3775277 | GTPase NRas | |||
| HL34 | 34 | slc8a1 | 9307807 | 9389516 | Sodium/calcium exchanger 1 | |
| HBR | HBR3 | 3 | bambi | 6831883 | 6835733 | BMP and activin membrane-bound inhibitor homolog |
| brinp3 | 15599984 | 15649304 | BMP/retinoic acid-inducible neural-specific protein 3 | |||
| HBR5 | 5 | cd62l | 26777327 | 26799978 | L-selectin | |
| tcf20 | 26859180 | 26869590 | Transcription factor 20 | |||
| HBR8 | 8 | igf1 | 10938104 | 10948207 | Insulin-like growth factor I | |
| apaf1 | 11240066 | 11267749 | Apoptotic protease-activating factor 1 | |||
| HBR9 | 9 | astn2 | 3666252 | 3758201 | Astrotactin-2 | |
| HBR15 | 15 | igf3 | 6453808 | 6456799 | Insulin-like growth factor 3 | |
| pdzd4 | 11133352 | 11148182 | PDZ domain-containing protein 4 | |||
| notch2 | 9664850 | 9698111 | Neurogenic locus notch homolog protein 2 | |||
| ocstamp | 12867795 | 12872198 | Osteoclast stimulatory transmembrane protein | |||
| HBR32 | 32 | grb10 | 14901703 | 14966162 | Growth factor receptor-bound protein 10 | |
| HBR42a | 42 | tgfb1 | 9282798 | 9286738 | Transforming growth factor beta-1 | |
| HBR42b | chk1 | 9822817 | 9825726 | Serine/threonine-protein kinase Chk1 | ||
| il7r-α | 9767788 | 9769952 | Interleukin-7 receptor subunit alpha | |||
| skp2 | 9738127 | 9743090 | S-phase kinase-associated protein 2 | |||
| ED | ED11 | 11 | espl1 | 8449618 | 8461291 | Separin |
| EC | EC12 | 12 | pik3r3 | 18123344 | 18135519 | Phosphatidylinositol 3-kinase regulatory subunit gamma |
| pik3r1 | 17996051 | 18000702 | Phosphatidylinositol 3-kinase regulatory subunit alpha | |||
| EC14 | 14 | igf1r | 5032149 | 5099651 | Insulin-like growth factor 1 receptor | |
| irs1 | 7026279 | 7029442 | Insulin receptor substrate 1-B | |||
| EC50 | 50 | sfrp2 | 17938832 | 17941016 | Secreted frizzled-related protein 2 |
HL, head length; HBR, head length/body length ratio; ED, eye diameter; EC, eye cross.