Fig. 1.

(A) Schematic illustrating how variants are called between consecutive alignments of a contig to the reference as well as within alignments. Each variant class is characterized by the degree of gap and/or overlap between alignments. (B,C) Screen shots of the Assemblytics web interface including output plots. Additional screen shots in Supplementary Note 3 show summary tables, variant file preview and ability to download all data including the Assemblytics unique anchor filtered delta file