TABLE 1.
Trait | GWAS | SNPs for PRS | ||||||
---|---|---|---|---|---|---|---|---|
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GWAS | h2 | h2chip | PRS r2 | Cases | Controls | SNPs | PING | PNC |
ADHDa | 0.76f | 0.28k | 0.001l | 2960 | 4519 | 1 206 462 | 5363 | — |
| ||||||||
ASDb | 0.90g | 0.17k | *0.008m | 3303 | 3428 | 9 499 590 | 10 179 | 3787 |
| ||||||||
BIPc | 0.90h | 0.25k | 0.028 | 7481 | 9250 | 2 427 221 | 13 965 | — |
| ||||||||
MDDd | 0.31–0.42i | 0.21k | *0.006 | 9240 | 9519 | 1 235 110 | 5622 | 3752 |
| ||||||||
SCZe | 0.81j | 0.23k | 0.184 | 34 241 | 45 604 | 9 444 231 | 17 119 | — |
The heritability (h2) and chip heritability (h2chip) are representative values for each disorder and suggest a large contribution of common genetic factors to disease liability. The within-trait PRS predictive power (PRS r2) of the GWAS results varies approximately according to the sample sizes.
Note that the VE by PRS reported here are likely underestimates for the PRS used here. The ASD and MDD GWAS used in these studies to create PRS were subsets (40% and 80%, respectively) of the sample used for this study.
Neale et al39.
Cross-Disorder Group of the Psychiatric Genomics40.
The Psychiatric GWAS Consortium Bipolar Disorder Working Group41.
Major Depressive Disorder Working Group of the Psychiatric GWAS Consortium et al42.
Schizophrenia Working Group of the Psychiatric Genomics Consortium43.
Faraone and Mick44.
Freitag45.
Craddock and Sklar46.
Sullivan et al47.
Sullivan et al48.
Cross-Disorder Group of the Psychiatric Genomics Consortium et al49.
Hamshere et al50.
Anney et al51.