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. 2018 Oct 16;9(5):e01954-18. doi: 10.1128/mBio.01954-18

TABLE 1.

Expression of neuron-specific genes in HeLa, HTB10, and SH-SY5Y cell lines

Gene Gene product name Expression (TPM) in linea :
HeLa HTB10 SH-SY5Y
STMN2 Stathmin 2 0.0 0.0 1,322.5
TCEAL7 Transcription elongation factor A-like 7 0.0 0.0 248.5
RGS4 Regulator of G-protein signaling 4 0.0 0.0 163.7
ISL1b Insulin gene enhancer protein 1 0.0 0.0 55.7
NNAT Neuronatin 0.0 0.0 45.8
VIP Vasoactive intestinal peptide 0.0 0.0 39.3
TAGLN3 Transgelin 3 0.0 0.0 39.0
SNAP25 Synaptosome-associated protein 25 1.8 0.7 24.6
LMO1 LIM domain only 1 0.6 0.0 17.0
CAMK2N1 Calmodulin-dependent protein kinase II inhibitor 1 1.2 0.0 11.8
SCG2 Secretogranin II 0.0 0.0 10.7
CDO1 Cysteine dioxygenase type 1 0.0 0.0 6.9
SLC10A4 Solute carrier family 10 member 4 0.0 0.0 3.1
DLX5 Distal-less homeobox 5 0.0 0.0 2.1
DBH Dopamine β-hydroxylase 0.0 0.0 1.7
SYT17 Synaptotagmin 17 0.1 0.0 1.1
CUX2 Cut-like homeobox 2 0.0 0.1 1.1
CNTN4 Contactin 4 0.0 0.2 1.0
DPYSL5 Dihydropyrimidinase-like 5 0.0 0.2 1.0
SV2C Synaptic vesicle glycoprotein 2C 0.0 0.0 0.7
ETV1 ETS variant 1 0.0 0.1 0.7
DCN Decorin 0.0 7.9 0.6
ISL2b Insulin gene enhancer protein 2 0.0 0.0 0.3
NXPH1 Neurexophilin 1 0.0 0.0 0.1
FOXP2 Forkhead box P2 0.2 2.2 0.0
GAD1 Glutamate decarboxylase 1 0.0 0.2 0.0
NELL1 Neural EGFL-like 1 0.0 0.3 0.0
SLC17A7 Solute carrier family 17 member 7 0.0 0.6 0.0
CHATb Choline acetyltransferase 0.0 0.0 0.0
OLIG2b Oligodendrocyte transcription factor 0.0 0.0 0.0
a

Shown are expression levels (transcripts per million reads [TPM]) of 26 highly neuron-specific marker genes selected from the Allen Brain Atlas (8284; http://brain-map.org) and BioGPS (85, 86; http://biogps.org) as examined by RNA sequencing.

b

Genes selectively expressed in motor neurons were selected from https://en.wikipedia.org/wiki/Neuronal_lineage_marker.