Table 2.
The considered data of The Cancer Genome Atlas extracted from the Genomic Data Commons portal
Cancer | # of tissues | # of tumoral | # of normal | % of tumoral | File size (MB) |
---|---|---|---|---|---|
ACC | 79 | 79 | 0 | 100 | 45,08 |
BLCA | 433 | 414 | 19 | 95,61 | 250,69 |
BRCA | 1222 | 1102 | 120 | 90,18 | 592,77 |
CESC | 309 | 304 | 5 | 98,38 | 180,67 |
CHOL | 45 | 36 | 9 | 80,00 | 26,49 |
COAD | 521 | 478 | 43 | 91,75 | 293,15 |
DLBC | 48 | 48 | 0 | 100 | 28,62 |
ESCA | 173 | 161 | 12 | 93,06 | 117,00 |
GBM | 174 | 156 | 18 | 89,66 | 107,08 |
HNSC | 546 | 500 | 46 | 91,58 | 317,43 |
KICH | 89 | 65 | 24 | 73,03 | 52,83 |
KIRC | 611 | 538 | 73 | 88,05 | 372,75 |
KIRP | 321 | 288 | 33 | 89,72 | 187,99 |
LAML | 173 | 173 | 0 | 100 | 98,28 |
LGG | 534 | 534 | 0 | 100 | 319,55 |
LIHC | 424 | 371 | 53 | 87,50 | 233,13 |
LUAD | 594 | 533 | 61 | 89,73 | 353,07 |
LUSC | 551 | 502 | 49 | 91,11 | 333,09 |
MESO | 86 | 86 | 0 | 100 | 50,96 |
OV | 309 | 309 | 0 | 100 | 238,69 |
PAAD | 182 | 177 | 5 | 97,25 | 108,34 |
PCPG | 186 | 178 | 8 | 95,70 | 107,82 |
READ | 177 | 166 | 11 | 93,79 | 100,34 |
SARC | 265 | 259 | 6 | 97,74 | 152,34 |
STAD | 407 | 375 | 32 | 92,14 | 268,86 |
TGCT | 156 | 156 | 0 | 100 | 95,25 |
THYM | 121 | 119 | 2 | 98,35 | 72,01 |
UCEC | 587 | 551 | 36 | 93,87 | 336,61 |
UCS | 56 | 56 | 0 | 100 | 34,28 |
UVM | 80 | 80 | 0 | 100 | 43,96 |
The number of tissues, the ratio of tumoral and normal ones, and the file size in MB is reported for each cancer dataset