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. 2018 Oct 15;19(Suppl 10):354. doi: 10.1186/s12859-018-2299-7

Table 2.

The considered data of The Cancer Genome Atlas extracted from the Genomic Data Commons portal

Cancer # of tissues # of tumoral # of normal % of tumoral File size (MB)
ACC 79 79 0 100 45,08
BLCA 433 414 19 95,61 250,69
BRCA 1222 1102 120 90,18 592,77
CESC 309 304 5 98,38 180,67
CHOL 45 36 9 80,00 26,49
COAD 521 478 43 91,75 293,15
DLBC 48 48 0 100 28,62
ESCA 173 161 12 93,06 117,00
GBM 174 156 18 89,66 107,08
HNSC 546 500 46 91,58 317,43
KICH 89 65 24 73,03 52,83
KIRC 611 538 73 88,05 372,75
KIRP 321 288 33 89,72 187,99
LAML 173 173 0 100 98,28
LGG 534 534 0 100 319,55
LIHC 424 371 53 87,50 233,13
LUAD 594 533 61 89,73 353,07
LUSC 551 502 49 91,11 333,09
MESO 86 86 0 100 50,96
OV 309 309 0 100 238,69
PAAD 182 177 5 97,25 108,34
PCPG 186 178 8 95,70 107,82
READ 177 166 11 93,79 100,34
SARC 265 259 6 97,74 152,34
STAD 407 375 32 92,14 268,86
TGCT 156 156 0 100 95,25
THYM 121 119 2 98,35 72,01
UCEC 587 551 36 93,87 336,61
UCS 56 56 0 100 34,28
UVM 80 80 0 100 43,96

The number of tissues, the ratio of tumoral and normal ones, and the file size in MB is reported for each cancer dataset