Table IV.
Gene | SNP | Nucleotide substitutiona | Amino acid substitution | Chromosome | Position | MAF (%) | Allele OR | P-value (allele frequency) |
---|---|---|---|---|---|---|---|---|
PLCB2 | rs200787930 | C/T | E1106K | 15 | 40289298 | 1.2 | 0.01 | 8.81×10−26 |
CXCL8 | rs188378669 | G/T | E31* | 4 | 73741568 | 1.2 | 0.01 | 1.33×10−25 |
MARCH1 | rs61734696 | G/T | Q137K | 4 | 164197303 | 1.2 | 0.01 | 1.50×10−25 |
VPS33B | rs199921354 | C/T | R80Q | 15 | 91013841 | 1.2 | 0.01 | 2.07×10−25 |
TMOD4 | rs115287176 | G/A | R277W | 1 | 151170961 | 1.2 | 0.01 | 9.03×10−25 |
COL6A3 | rs146092501 | C/T | E1386K | 2 | 237371861 | 1.2 | 0.02 | 1.27×10−24 |
ZNF77 | rs146879198 | G/A | R340* | 19 | 2934109 | 1.2 | 0.02 | 1.27×10−24 |
ADGRL3 | rs192210727 | G/T | R580I | 4 | 61909615 | 1.3 | 0.07 | 1.12×10−20 |
ALDH2 | rs671 | G/A | E504K | 12 | 111803962 | 27.6 | 1.54 | 2.67×10−19 |
ACAD10 | rs11066015 | G/A | 12 | 111730205 | 27.5 | 0.65 | 3.35×10−19 | |
BRAP | rs3782886 | A/G | 12 | 111672685 | 29.3 | 1.49 | 5.52×10−17 | |
HECTD4 | rs11066280 | T/A | 12 | 112379979 | 29.0 | 1.49 | 6.48×10−17 | |
HECTD4 | rs2074356 | C/T | 12 | 112207597 | 25.4 | 1.48 | 4.24×10−15 | |
OR52E4 | rs11823828 | T/G | F227L | 11 | 5884973 | 36.6 | 1.43 | 1.86×10−12 |
rs12229654 | T/G | 12 | 110976657 | 22.5 | 1.39 | 1.45×10−10 | ||
NAA25 | rs12231744 | C/T | R876K | 12 | 112039251 | 35.1 | 0.74 | 1.07×10−9 |
ATXN2 | rs7969300 | T/C | N248S | 12 | 111555908 | 38.8 | 0.76 | 8.46×10−9 |
GOSR2 | rs1052586 | T/C | 17 | 46941097 | 48.7 | 0.78 | 1.80×10−7 | |
TCHP | rs74416240 | G/A | 12 | 109904793 | 13.3 | 1.37 | 2.47×10−7 | |
GIT2 | rs925368 | A/G | N389S | 12 | 109953174 | 12.5 | 1.37 | 4.41×10−7 |
rs2523644 | A/G | 6 | 31374707 | 8.1 | 1.49 | 4.75×10−7 | ||
OAS3 | rs2072134 | C/T | 12 | 112971371 | 17.6 | 1.33 | 5.28×10−7 | |
CCDC63 | rs10774610 | T/C | 12 | 110902439 | 23.7 | 1.30 | 5.42×10−7 | |
rs2596548 | G/T | 6 | 31362769 | 5.4 | 1.60 | 6.01×10−7 | ||
CCDC63 | rs10849915 | T/C | 12 | 110895818 | 23.6 | 1.28 | 7.71×10−7 |
Allele frequencies were analyzed using Fisher's exact test.
Major allele/minor allele. SNP, single nucleotide polymorphism; MAF, minor allele frequency; OR, odds ratio.