Table 1. Fst and SHD distances of modern (rec) and ancient (arch) populations measured from different Conqueror subpopulations.

A
Conqueror subpopulation	all 102 samples	all 102 samples	60 European	60 European	60 European + 11 Eurasian	60 European + 11 Eurasian	31 East Eurasian	31 East Eurasian	31 East Eurasian + 11 Eurasian	31 East Eurasian + 11 Eurasian
pop. distance	Fst	SHD	Fst	SHD	Fst	SHD	Fst	SHD	Fst	SHD
Adg_rec	0.03069	0.941297	0.01847	0.916744	0.01936	0.929424	0.13176	1.000000	0.08642	0.998740
ArBA_arch	0.03063	0.929942	0.01694	0.915418	0.01812	0.919066	0.11985	1.000000	0.08027	0.998740
Arm_rec	0.02265	0.938107	0.01425	0.938045	0.01308	0.935801	0.12225	1.000000	0.07625	0.992298
BalBA_arch	no data	0.920117	no data	0.882045	no data	0.890278	no data	1.000000	no data	0.975465
Balt_rec	0.02087	0.935454	0.02184	0.930559	0.02062	0.921932	0.10376	1.000000	0.06336	0.980575
Bel_rec	0.03520	0.918819	0.05475	0.910862	0.05163	0.927491	0.08100	0.945993	0.05312	0.953125
Bul_rec	0.02543	0.935656	0.01647	0.918425	0.01470	0.920755	0.13112	1.000000	0.08118	0.995443
Bur_rec	0.07933	0.924067	0.13283	0.976039	0.12876	0.959720	0.04334	0.947674	0.04783	0.929555
Cau_rec	0.01963	0.919181	0.02536	0.931991	0.02370	0.934971	0.08777	0.991891	0.05296	0.990639
CenA_rec	0.05540	0.912816	0.10903	0.980569	0.10397	0.983404	0.03136	0.895111	0.02984	0.905585
CrS_rec	0.04000	0.881627	0.03109	0.878611	0.02665	0.870518	0.15432	1.000000	0.09882	0.979546
Czh_rec	0.03158	0.891439	0.03319	0.903625	0.02864	0.871589	0.12000	0.990123	0.07398	0.957738
Dan_rec	0.03603	0.878530	0.01890	0.867675	0.01712	0.870875	0.16505	0.999586	0.10783	0.990991
Eng_rec	0.02249	0.899587	0.01663	0.884781	0.01561	0.884072	0.11607	0.998612	0.07224	0.990175
EULNBA_arch	0.03244	0.938095	0.02289	0.957061	0.02199	0.926604	0.11739	1.000000	0.07719	0.956861
Fin_rec	0.03113	0.901420	0.02458	0.895796	0.02262	0.895406	0.13771	0.999028	0.08810	0.989871
Fre_rec	0.01474	0.942980	0.00950	0.943249	0.00842	0.939393	0.10498	1.000000	0.06241	0.991027
Ger_rec	0.01871	0.934574	0.01890	0.925990	0.01661	0.932258	0.11106	1.000000	0.06581	0.998740
Hun_rec	0.03190	0.890426	0.02364	0.885860	0.02125	0.890290	0.15281	0.984949	0.09680	0.975225
Ire_rec	0.02310	0.919608	0.02109	0.888993	0.01971	0.898154	0.11360	0.999485	0.07024	0.997708
Mon_rec	0.09321	0.933012	0.14892	0.992259	0.14527	0.988984	0.04207	0.924401	0.05331	0.926916
NE_rec	0.01698	0.944518	0.01908	0.939517	0.01813	0.933443	0.08938	0.994413	0.05383	0.983392
Nor_rec	0.03419	0.933588	0.02570	0.909962	0.02511	0.918304	0.14542	1.000000	0.09406	0.996202
PoBA_arch	-0.02559	0.940929	-0.00459	0.907988	-0.00849	0.922299	0.03135	1.000000	-0.00159	1.000000
Pol_rec	0.03021	0.890441	0.02545	0.889243	0.02223	0.877829	0.13205	0.997879	0.08273	0.979629
Rus_rec	0.02505	0.873977	0.02999	0.898988	0.02708	0.870649	0.09965	0.991407	0.06093	0.956590
Scy_arch	0.01516	0.961319	0.02678	0.933904	0.02411	0.943931	0.08116	1.000000	0.04594	0.998740
Sru_arch	0.00852	0.913433	-0.00190	0.896586	-0.00393	0.894591	0.11688	1.000000	0.06535	0.995443
Swe_rec	0.01790	0.895493	0.00936	0.889648	0.00798	0.887236	0.12056	1.000000	0.07260	0.991380
Tat_rec	0.00941	0.858003	0.02367	0.928852	0.01849	0.877419	0.07007	0.968067	0.03399	0.920860
Tuv_rec	0.07980	0.914069	0.14084	0.982747	0.13197	0.894807	0.04943	0.971963	0.04569	0.883068
Ukr_rec	0.02527	0.920220	0.02799	0.889057	0.02471	0.903087	0.10272	1.000000	0.06250	0.998740
B
Similarity levels in descending order
Fst value					0.0–0.01	0.01–0.02	0.02–0.03	0.03–0.05
Shared Hg. Frequency Distance (SHD) value					0.86–0.88	0.88–0.90	0.90–0.92	0.92–0.94

(A) Distance values. (B) Color code of distance values. Only populations which showed close distance values with both methods for any of the Conqueror subpopulations are displayed here from S4C Table. Details of subgrouping are shown in S1A and S1B Table.