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. 2018 Oct 18;8:15351. doi: 10.1038/s41598-018-33619-0

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Specific bacterial genera correlate only with in vivo H₂ production. Spearman’s rank correlation coefficients of faecal microbiota, H₂ production, food and starch intake, body weight, and fat mass of mice exposed to HDD or LDD for 3 weeks after weaning (n = 12 per diet, Study 1). Non-red and non-blue cells all have a Spearman’s correlation value of 0 with FDR P value > 0.13. Nomenclature of microbial genus level taxa is based on highest achievable taxonomic resolution at phylum, class, order, family or genus level.