Table 1.
Peak SNP associated with SWPP and the evaluation of beneficial alleles.
| SNPa | Chr.b | Position | Location | Year | -log10(P) | MAFc | Allele 1 | Allele 2 | Average SWPP of accessions with allele 1d | Average SWPP of accessions with allele 2d | Average SWPP of populationd |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Gm02:17792241 | 2 | 17792241 | Harbin | 2016 | 4.91 | 0.05 | G | T | 27.33 | 19.71 | 20.07 |
| Harbin | Average | 3.63 | 27.53 | 18.66 | 19.01 | ||||||
| Gm02:27731352 | 2 | 27731352 | Shenyang | 2016 | 3.55 | 0.05 | C | A | 32.57 | 25.37 | 25.91 |
| Shenyang | Average | 3.64 | 30.4 | 24.95 | 25.48 | ||||||
| Gm03:25789435 | 3 | 25789435 | Shenyang | 2016 | 4.22 | 0.06 | A | G | 31.14 | 25.73 | 25.91 |
| Shenyang | Average | 4.85 | 31.81 | 25.28 | 25.48 | ||||||
| Gm03:26388034 | 3 | 26388034 | Shenyang | 2016 | 3.63 | 0.05 | G | T | 26.20 | 19.19 | 25.91 |
| Shenyang | Average | 3.58 | 25.73 | 19.83 | 25.48 | ||||||
| Gm07:19488264 | 7 | 19488264 | Shenyang | 2016 | 3.55 | 0.06 | G | T | 28.00 | 25.84 | 25.91 |
| Shenyang | Average | 4.04 | 27.1 | 25.34 | 25.48 | ||||||
| Gm08:15768591 | 8 | 15768591 | Harbin | 2016 | 4.72 | 0.22 | T | C | 23.07 | 19.15 | 20.07 |
| Harbin | Average | 4.22 | 21.75 | 18.19 | 19.01 | ||||||
| Gm08:15768603 | 8 | 15768603 | Harbin | 2016 | 4.04 | 0.27 | A | G | 21.76 | 19.42 | 20.07 |
| Harbin | Average | 3.75 | 20.62 | 18.39 | 19.01 | ||||||
| Gm10:34747895 | 10 | 34747895 | Gongzhuling | 2016 | 3.70 | 0.07 | T | C | 20.10 | 19.95 | 20.04 |
| Gongzhuling | Average | 3.76 | 19.64 | 18.9 | 19.58 | ||||||
| Gm10:34946492 | 10 | 34946492 | Gongzhuling | 2016 | 4.47 | 0.05 | C | T | 20.07 | 19.68 | 20.04 |
| Gongzhuling | Average | 4.25 | 19.65 | 18.22 | 19.58 | ||||||
| Gm12:24101071 | 12 | 24101071 | Shenyang | 2016 | 3.61 | 0.06 | C | A | 30.35 | 25.83 | 25.91 |
| Shenyang | Average | 3.82 | 30.47 | 25.38 | 25.48 | ||||||
| Gm12:31782089 | 12 | 31782089 | Shenyang | 2016 | 3.84 | 0.05 | C | A | 28.76 | 25.76 | 25.91 |
| Shenyang | Average | 4.57 | 27.71 | 25.45 | 25.48 | ||||||
| Gm14:24306475 | 14 | 24306475 | Shenyang | 2016 | 4.41 | 0.05 | G | T | 26.40 | 25.88 | 25.91 |
| Shenyang | Average | 5.07 | 25.55 | 25.39 | 25.48 | ||||||
| Gm14:47326193 | 14 | 47326193 | Shenyang | 2016 | 4.64 | 0.06 | T | G | 25.93 | 23.37 | 25.91 |
| Shenyang | Average | 4.03 | 25.63 | 22.96 | 25.48 | ||||||
| Gm15:45663581 | 15 | 45663581 | Gongzhuling | 2016 | 4.29 | 0.07 | T | A | 26.24 | 19.86 | 20.04 |
| Gongzhuling | Average | 4.11 | 24.28 | 19.46 | 19.58 | ||||||
| Gm17:10196755 | 17 | 10196755 | Gongzhuling | 2016 | 4.82 | 0.05 | A | C | 20.91 | 19.97 | 20.04 |
| Gongzhuling | Average | 4.74 | 19.68 | 19.52 | 19.58 | ||||||
| Gm18:23052511 | 18 | 23052511 | Shenyang | 2016 | 4.63 | 0.05 | C | A | 25.97 | 19.97 | 25.91 |
| Shenyang | Average | 5.29 | 25.53 | 20.37 | 25.48 | ||||||
| Gm19:11082560 | 19 | 11082560 | Gongzhuling | 2015 | 3.53 | 0.41 | C | T | 19.88 | 19.27 | 19.58 |
| Gongzhuling | Average | 3.62 | 19.67 | 19.51 | 19.58 | ||||||
| Gm19:19848537 | 19 | 19848537 | Shenyang | 2016 | 4.07 | 0.06 | G | A | 31.79 | 25.53 | 25.91 |
| Shenyang | Average | 3.73 | 28.96 | 25.26 | 25.48 | ||||||
| Gm19:19848932 | 19 | 19848932 | Shenyang | 2016 | 4.13 | 0.06 | G | A | 32.46 | 25.49 | 25.91 |
| Shenyang | Average | 4.25 | 28.83 | 25.26 | 25.48 | ||||||
| Gm20:29716176 | 20 | 29716176 | Gongzhuling | 2015 | 4.61 | 0.05 | A | C | 19.63 | 19.18 | 19.58 |
| Gongzhuling | 2016 | 5.17 | 20.11 | 19.36 | 20.04 | ||||||
| Gongzhuling | Average | 5.77 | 19.61 | 19.38 | 19.58 | ||||||
asingle nucleotide polymorphisms; bchromosome; cminor allele frequency; dgram.