Skip to main content
. Author manuscript; available in PMC: 2018 Oct 19.
Published in final edited form as: Nat Protoc. 2017 Jan 26;12(2):439–451. doi: 10.1038/nprot.2016.174

TABLE 3 |.

Troubleshooting table.

Step Problem Possible reason Possible solution
1 No growth or slow growth of epithelial cells in coculture Use of a nonrecommended feeder cell line Use only the J2 strain of mouse Swiss-3T3 fibroblasts
13A(iii) No live cells after tissue processing Extended ethanol rinse time Rinse no longer than 3 s
13B(vi) No growth of colon or pancreas cell lines Incubation in an incubator with an atmospheric gas mixture Incubate in low oxygen (2% O2)
16 Observed J2 cell proliferation after irradiation Irradiation dose is too low Increase irradiation dose (up to 60 Gy)
17 Low cell viability after freeze-thaw procedure Storage of cells at −80 °C Store cells in a liquid nitrogen freezer
20 Epithelial cells detach together with
J2 feeder cells during first step of differential trypsin treatment
Trypsin treatment was too long Do not extend trypsin treatment beyond 1 min
25 Low cell viability after freeze-thaw procedure Storage of cells at −80 °C Store cells in a liquid nitrogen freezer
26A(ii) No colonies visible when recording starts Cell confluence is too low Increase the number of cells added to the wells
26A(iv) No cells visible Condensation on the plate surfaces Let the plate adapt to incubator conditions for at least 30 min
26A(vii) No motility; wrong cell morphology Temperature, C02 concentration and/or humidity not correct Make sure that temperature, C02 level and humidity level are within the range for cell growth
Box 1 Low quality of conditioned medium-does not support cell growth Suboptimal concentration of growth factors Use the correct number of cells. Condition the medium for no less than 72 h