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. 2018 Oct 19;13(10):e0205995. doi: 10.1371/journal.pone.0205995

Table 4. Proteins of the phage Str01 detected by mass spectrometry.

no NCBI Identical Protein Group phage protein accession phage protein defintion score % coverage emPAI
A 1 23526059 APZ81895 major capsid protein 7931 78.1 6.35
2 92043013 APZ81902 tail protein 410 34.2 3.37
3 5668030 APZ81903 hypothetical protein 184 55.3 3.1
4 23526069 APZ81888 portal protein 769 39.0 1.7
5 92043017 APZ81889 tail protein 519 34.0 1.45
B 6 137081518 APZ81883 minor capsid protein 113 35.2 0.98
7 23526073 APZ81882 holin 150 43.2 0.94
8 14467 APZ81898 nucleotide-binding protein 135 22.1 0.91
9 23526076 APZ81901 terminase small subunit 139 18.2 0.58
10 43836092 APZ81891 N-acetylmuramoyl-L-alanine amidase 134 10.8 0.39
11 23526079 APZ81875 minor capsid protein 112 6.8 0.21
12 137081495 APZ81886 tail tape measure protein 183 4.9 0.15

Proteins are divided into ‘A’—“high abundance” and ‘B’—“low abundance” groups based on emPAI (Exponentially Modified Protein Abundance Index) parameter. Hit proteins were filtered based on: ions significance threshold (< 1e-5), ions expect cut-off (< 1e-5), overall protein score (> = 100) and emPAI (> = 0.15).