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The number of differentially expressed genes in common between Cuffdiff, DESeq, edgeR, and SAMSeq
| Upregulated Genes, n | Upregulated Genes with Absolute FC >2, n | Downregulated Genes, n | Downregulated Genes with Absolute FC >2, n | |
|---|---|---|---|---|
| BAVc vs. TAVc | 2* | 0 | 0 | 0 |
| BAVc vs. TAVn | 462 | 324 | 282 | 192 |
| TAVc vs. TAVn | 329 | 245 | 170 | 121 |
FC, fold change.
Based on Cuffdiff and SAMSeq only.
