Skip to main content
. 2018 Oct 17;6:e5793. doi: 10.7717/peerj.5793

Table 2. Diversity values of the trnH-psbA IGS in the investigated dataset.

Dataset N L p H h Hid S PICs
West Eurasian species 207 503 0.000–0.008 (±0.004) 12 0.515 H1-H12 6 (27) 6
Q. afares 7 491 0.000 1 0.000 H1 0 0
Q. brantii 7 487 0.000 2 0.476 H5, H6 0 (1) 0
Q. cerris 52 493 0.000–0.002 8 0.538 H1-H3, H5-H7, H9, H10 1 (9) 1
Q. castaneifolia 2 491 0.000 1 0.000 H1 0 0
Q. crenata 6 491 0.000 1 0.000 H1 0 0
Q. trojanaa 45 493 0.000–0.002 3 0.369 H1, H2, H4 1 (3) 1
Q. ithaburensisb 33 493 0.000–0.002 5 0.655 H1, H2, H4, H6, H9 1 (8) 1
Q. look 3 488 0.000 2 0.667 H9, H10 0 (1) 0
Q. suber 47 501 0.000–0.006 3 0.303 H1, H11, H12 3 (18) 3
Q. libani 5 493 0.000–0.002 3 0.700 H1, H3, H8 1 (8) 0
Q. acutissimac 401 564 0.000–0.004 10 n.d. /d 4 (79) 0
Q. variabilisc 528 594 0.000–0.004 11 n.d. /d 2 (99) 0

Notes.

N
number of sequences
L
Aligned length (bp) with the inversion deleted
p
uncorrected p-distance range (STD)
H
Number of identified haplotypes (gaps included)
h
Haplotype diversity
Hid
haplotype code
S
Number of polymorphic sites (gaps included)
PICs
Number of Parsimony Informative Characters
a

Including subsp. euboica.

b

Including subsp. macrolepis.

d

No haplotype shared with the West Eurasian dataset, one haplotype shared between the two East Asian species.