Table 2. Diversity values of the trnH-psbA IGS in the investigated dataset.
Dataset | N | L | p | H | h | Hid | S | PICs |
---|---|---|---|---|---|---|---|---|
West Eurasian species | 207 | 503 | 0.000–0.008 (±0.004) | 12 | 0.515 | H1-H12 | 6 (27) | 6 |
Q. afares | 7 | 491 | 0.000 | 1 | 0.000 | H1 | 0 | 0 |
Q. brantii | 7 | 487 | 0.000 | 2 | 0.476 | H5, H6 | 0 (1) | 0 |
Q. cerris | 52 | 493 | 0.000–0.002 | 8 | 0.538 | H1-H3, H5-H7, H9, H10 | 1 (9) | 1 |
Q. castaneifolia | 2 | 491 | 0.000 | 1 | 0.000 | H1 | 0 | 0 |
Q. crenata | 6 | 491 | 0.000 | 1 | 0.000 | H1 | 0 | 0 |
Q. trojanaa | 45 | 493 | 0.000–0.002 | 3 | 0.369 | H1, H2, H4 | 1 (3) | 1 |
Q. ithaburensisb | 33 | 493 | 0.000–0.002 | 5 | 0.655 | H1, H2, H4, H6, H9 | 1 (8) | 1 |
Q. look | 3 | 488 | 0.000 | 2 | 0.667 | H9, H10 | 0 (1) | 0 |
Q. suber | 47 | 501 | 0.000–0.006 | 3 | 0.303 | H1, H11, H12 | 3 (18) | 3 |
Q. libani | 5 | 493 | 0.000–0.002 | 3 | 0.700 | H1, H3, H8 | 1 (8) | 0 |
Q. acutissimac | 401 | 564 | 0.000–0.004 | 10 | n.d. | /d | 4 (79) | 0 |
Q. variabilisc | 528 | 594 | 0.000–0.004 | 11 | n.d. | /d | 2 (99) | 0 |
Notes.
- N
- number of sequences
- L
- Aligned length (bp) with the inversion deleted
- p
- uncorrected p-distance range (STD)
- H
- Number of identified haplotypes (gaps included)
- h
- Haplotype diversity
- Hid
- haplotype code
- S
- Number of polymorphic sites (gaps included)
- PICs
- Number of Parsimony Informative Characters
Including subsp. euboica.
Including subsp. macrolepis.
GenBank haplotype accessions: KT152191, KT152192, KT152193, KT152194, KT152195, KT152196, KT152197, KT152198, KT152199, KT152200, JF753573, JF753574, JF753575, JF753576, JF753577, JF753578, JF753579, JF753580, JF753581, JF753582, JF753583, KM210647, HE585136.
No haplotype shared with the West Eurasian dataset, one haplotype shared between the two East Asian species.