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. Author manuscript; available in PMC: 2018 Oct 20.
Published in final edited form as: Curr Protoc Mol Biol. 2017 Jul 5;119:29A.5.1–29A.5.38. doi: 10.1002/cpmb.40

Figure 2. Flow charts of the two multi-step processes described in this protocol.

Figure 2.

In the series of steps lettered A1–8, we check image parameters and prepare a mask to extract the brain image from non-brain tissues (left column). In the second series of steps (right column) we align the brain images into a single matrix where the anatomical features of each image are in the coordinates as every other image in the dataset.