Table 4.

miRNA regulation of DEGs in DTS and CK samples

miRNA	sequencea	target gene	regulationb	proteinID	description
miR164a	TGGAGAAGCAGGGCACGTGCA	TRINITY_DN23818_c1_g2	up	NAC22_ARATH	NAC domain-containing protein 21/22
miR172e-3p	GAATCTTTAGACGCATGCAT	TRINITY_DN25766_c0_g2	up
miR6225-5p	TAACTAGGCTCAAAAGATTCGTCT	TRINITY_DN23398_c1_g2	up	NC100_ARATH	NAC domain-containing protein 100
miR6284	TTTGGACGCATGCATGGAGCATT	TRINITY_DN25766_c0_g2	up	NAC22_ARATH	NAC domain-containing protein 21/22
miR854a	GAGGAGGAAGAGGAGGAGGAG	TRINITY_DN23794_c0_g2	up	NIP21_MAIZE	Aquaporin NIP2–1
miR6220-5p	CTCCATCCCAAATTATAAGACGTT	TRINITY_DN26349_c2_g1	down	TIP42_MAIZE	Aquaporin TIP4–2
miR6248	TAATTTGGAATGGAGGGAGTA
miR2671j	TTAAAAGATTCGTCTCGTCCA	TRINITY_DN28159_c3_g1	down	GRF5_ORYSJ	Growth-regulating factor 5
miR396e-5p	TCCACAGGCTTTCTTGAACTG
miR4993	AGCAGCGGCGGTGGCGGATGC	TRINITY_DN22667_c2_g2	up	LEA14_GOSHI	Late embryogenesis abundant protein Lea14-A
miR5175a	TTAGAATTTGGAAAGGAGGGA	TRINITY_DN26424_c6_g1	up	LEA5_CITSI	Late embryogenesis abundant protein Lea5
miR5205b	CTTATAATTTGGGATGGAGGGAGT
miR5568f-3p	TCTTATAATTTGGAATGGAGG
miR6220-3p	AATGACTTATAATTTGGGATGGAG
miR6248	TAATTTGGAATGGAGGGAGTA
miR5568f-3p	TCTTATAATTTGGAATGGAGG	TRINITY_DN16664_c1_g1	up	LEA5D_GOSHI	Late embryogenesis abundant protein Lea5-D
miR6248	TAATTTGGAATGGAGGGAGTA
		TRINITY_DN17990_c0_g1	up	EF114_ARATH	Ethylene-responsive transcription factor ERF114
miR854a	GAGGAGGAAGAGGAGGAGGAG	TRINITY_DN20050_c2_g1	up
		TRINITY_DN24075_c2_g3	up	ERF53_ARATH	Ethylene-responsive transcription factor ERF053
miR4993	AGCAGCGGCGGTGGCGGATGC	TRINITY_DN22160_c1_g2	up	ERF60_ARATH	Ethylene-responsive transcription factor ERF060
miR1023a-3p	CAAGAATTGGATGAAGTGCAT	TRINITY_DN22589_c0_g1	down	R13L3_ARATH	Putative disease resistance RPP13-like protein 3
miR3522	AGCCCAAGTCGAGACAGCTGA	TRINITY_DN20821_c1_g2	down
miR6220-5p	CTCCATCCCAAATTATAAGACGTT	TRINITY_DN17917_c0_g2	down	RGA1_SOLBU	Putative disease resistance protein RGA1
miR8014-3p	ATTAATCAATGTTTGGACAATT	TRINITY_DN20066_c3_g1	down	RGA3_SOLBU	Putative disease resistance protein RGA3
miR854a	GAGGAGGAAGAGGAGGAGGAG	TRINITY_DN22688_c0_g1	down
		TRINITY_DN25829_c1_g3	up
miR6220-5p	CTCCATCCCAAATTATAAGACGTT	TRINITY_DN25593_c2_g1	up	RGA4_SOLBU	Putative disease resistance protein RGA4
miR5205b	CTTATAATTTGGGATGGAGGGAGT	TRINITY_DN24732_c1_g1	down	RK12_ORYSJ	50S ribosomal protein L12, chloroplastic
miR5568f-3p	TCTTATAATTTGGAATGGAGG
miR6248	TAATTTGGAATGGAGGGAGTA
miR854a	GAGGAGGAAGAGGAGGAGGAG	TRINITY_DN18780_c1_g2	down	RK28_ARATH	50S ribosomal protein L28, chloroplastic
		TRINITY_DN25639_c1_g1	down	WRK19_ARATH	Probable WRKY transcription factor 19
		TRINITY_DN23859_c0_g1	up	WRK40_ARATH	Probable WRKY transcription factor 40
miR172e-3p	GAATCTTTAGACGCATGCAT	TRINITY_DN19490_c0_g1	up	WRK54_ARATH	Probable WRKY transcription factor 54
miR6284	TTTGGACGCATGCATGGAGCATT
miR1436	ACTTTCAATGGGACGGAGGGAGT	TRINITY_DN22501_c1_g1	up	WRK57_ARATH	Probable WRKY transcription factor 57
miR4993	AGCAGCGGCGGTGGCGGATGC
miR5205b	CTTATAATTTGGGATGGAGGGAGT
miR6220-3p	AATGACTTATAATTTGGGATGGAG
miR5139	AACCTGGCTCCGATACCA	TRINITY_DN18434_c1_g4	up	5NG4_PINTA	Auxin-induced protein 5NG4

^amiRNA sequence

^bup−/down-regulation of the gene in DTS compared to CK samples