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. 2018 Oct 15;8:419. doi: 10.3389/fonc.2018.00419

Table 2.

Classification of biomarkers of glioblastoma that are relevant to management.

Cytogenetic biomarkers
  • BRAF mutation

  • EGF, latrophilin and 7 transmembrane domain-containing 1 on chromosome 1 (ELTD1) EGFRvIII deletion

  • Loss of heterozygosity (LOH) on chromosomes 1p, 19q, 17p, and 10q

  • Loss of p16 tumor suppressor gene pathway

  • Loss of p53 tumor suppressor gene

  • MAGE-E1, a glioma-specific member of MAGE (melanoma-associated antigen) family

  • Mdm2 amplification in 15% of malignant gliomas

  • PTEN deletion or mutation

  • RBI wild type, no mutation

Methylation profiling of brain tumors
  • 06-methylguanine-DNA methyltransferase (MGMT) promoter methylation (17)

  • Detection of methylation-dependent DNA sequence variation: methylSNP

  • Methylation of TMS1, an intracellular signaling molecule

Protein biomarkers
  • ALDH1A3 in glioma-like stem cells in glioblastoma

  • CSF protein profiling: N-myc oncoprotein, caldesmon, attractin

  • Receptor protein tyrosine phosphatase

  • Serum protein fingerprinting: circulating exosomes containing mRNA, miRNA, and angiogenic proteins

Metabolite biomarkers detected by magnetic resonance spectroscopy (MRS)
  • Choline

  • Lactate

  • N-acetylaspartate (diminished)

MicroRNAs (miRNAs)
Prognostic biomarkers
  • 14-3-3zeta positive expression

  • Human telomerase reverse transcriptase (hTERT) transcripts; survival is worse in high hTERT expressors

  • Isocitrate dehydrogenase-1 (IDH1) mutation status

Biomarkers of response to therapy
  • Biomarkers to predict response to EGFR inhibitors

  • MRI as biomarker for response of brain tumor to therapy