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. 2018 Oct 15;9:472. doi: 10.3389/fgene.2018.00472

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Copyright © 2018 Joshi, Árnyasi, Lien, Gjøen, Alvarez and Kent.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Summary of the SNP metrics based on 58,466 SNPs on 4,947 GST^® samples after being subjected to sample call rate in Best Practices Workflow of Axiom Analysis Suite software (see methodology). (A) Distribution of SNPs based on HW p-values obtained from the exact HWE test. (B) Distribution of SNPs based on SNP call rate. (C) Distribution of SNPs based on minor allele frequency (MAF). (D) Distribution of SNPs based on types of cluster formation (quality). The different types of clusters are based on the quality of the SNPs and has been described in the methodology.