Table 3.
Marker numbers, length, density, and correlations for male, female, and sex-averaged Build 2 linkage map.
| LG | No. of SNPs | Physical length1 | Length (cM) |
(F:M length) | Marker density per Mb | Marker density per cM |
Correlation2 |
||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| F | M | SA | F | M | SA | F | M | SA | |||||
| LG01 | 2112 | 38.37 | 71.64 | 53.35 | 62.11 | 1.34 | 55.04 | 29.48 | 39.59 | 34 | 0.98 | 0.98 | 0.99 |
| LG02 | 1749 | 35.26 | 68.22 | 80.97 | 66.27 | 0.84 | 49.60 | 25.64 | 21.6 | 26.39 | 0.98 | 0.99 | 0.99 |
| LG03 | 1349 | 68.55 | 99.59 | 68.38 | 84.91 | 1.46 | 19.68 | 13.55 | 19.73 | 15.89 | 0.91 | 0.84 | 0.88 |
| LG04 | 1707 | 38.04 | 60.9 | 62.85 | 61.39 | 0.97 | 44.87 | 28.03 | 27.16 | 27.81 | 0.99 | 0.98 | 0.99 |
| LG05 | 1925 | 34.63 | 70.2 | 53.59 | 61.02 | 1.31 | 55.59 | 27.42 | 35.92 | 31.55 | 0.99 | 0.99 | 0.99 |
| LG06 | 1948 | 44.57 | 71.66 | 80.09 | 73.6 | 0.89 | 43.71 | 27.18 | 24.32 | 26.47 | 0.99 | 0.98 | 0.99 |
| LG07 | 3391 | 62.06 | 132.69 | 67.45 | 96.68 | 1.97 | 54.64 | 25.56 | 50.27 | 35.07 | 0.99 | 0.99 | 0.99 |
| LG08 | 1607 | 30.80 | 84.18 | 72.48 | 77.72 | 1.16 | 52.18 | 19.09 | 22.17 | 20.68 | 0.98 | 0.98 | 0.99 |
| LG09 | 1564 | 27.52 | 65.26 | 58.34 | 60.39 | 1.12 | 56.83 | 23.97 | 26.81 | 25.9 | 0.97 | 0.97 | 0.98 |
| LG10 | 1387 | 32.43 | 63.42 | 56.51 | 59.69 | 1.12 | 42.77 | 21.87 | 24.54 | 23.24 | 0.98 | 0.97 | 0.98 |
| LG11 | 1821 | 36.47 | 78.49 | 62.87 | 70.07 | 1.25 | 49.93 | 23.2 | 28.96 | 25.99 | 0.97 | 0.99 | 0.99 |
| LG12 | 1979 | 41.23 | 69.03 | 56.09 | 61.99 | 1.23 | 48.00 | 28.67 | 35.28 | 31.92 | 0.98 | 0.99 | 0.99 |
| LG13 | 1614 | 32.34 | 72.9 | 54.64 | 62.79 | 1.33 | 49.91 | 22.14 | 29.54 | 25.7 | 0.99 | 0.99 | 0.99 |
| LG14 | 2030 | 39.26 | 69.67 | 55.02 | 61.99 | 1.27 | 51.71 | 29.14 | 36.9 | 32.75 | 0.99 | 0.98 | 0.99 |
| LG15 | 1836 | 36.15 | 65 | 54.95 | 58.68 | 1.18 | 50.79 | 28.25 | 33.41 | 31.29 | 0.95 | 0.97 | 0.96 |
| LG16 | 1862 | 43.86 | 71.61 | 59.94 | 64.36 | 1.19 | 42.45 | 26 | 31.06 | 28.93 | 0.99 | 0.98 | 0.99 |
| LG17 | 2005 | 40.92 | 68.88 | 60.36 | 63.97 | 1.14 | 49.00 | 29.11 | 33.22 | 31.34 | 0.98 | 0.97 | 0.98 |
| LG18 | 1628 | 37.01 | 63.14 | 61.85 | 62.1 | 1.02 | 43.99 | 25.78 | 26.32 | 26.22 | 0.99 | 0.99 | 1 |
| LG19 | 1646 | 31.25 | 64.21 | 50.37 | 56.04 | 1.27 | 52.67 | 25.63 | 32.68 | 29.37 | 0.98 | 0.99 | 0.98 |
| LG20 | 1899 | 36.77 | 81.26 | 62.64 | 71.31 | 1.3 | 51.65 | 23.37 | 30.32 | 26.63 | 0.99 | 0.99 | 0.99 |
| LG22 | 1643 | 37.01 | 67.09 | 72.69 | 69.25 | 0.92 | 44.39 | 24.49 | 22.6 | 23.73 | 0.98 | 0.98 | 0.98 |
| LG23 | 1484 | 44.10 | 73.86 | 54.17 | 63.36 | 1.36 | 33.65 | 20.09 | 27.4 | 23.42 | 0.96 | 0.98 | 0.97 |
| Total | 40186 | 868.59 | 1632.9 | 1359.6 | 1469.69 | ||||||||
| Average | 1827 | 39.48 | 74.22 | 61.80 | 66.80 | 1.20 | 47.41 | 24.61 | 29.56 | 27.34 | 0.98 | 0.98 | 0.98 |
1The physical length (Mb) is retrieved from O_niloticus_UMD1 Assembly. 2The correlation between the genetic distance of SNPs (cM) on the linkage map and the physical distance (bp) according to the reference genome assembly. F, M, and SA represents female, male, and sex-averaged maps, respectively.