Table 2. The seven selected genes associated with immune response in fish species (according to [21, 22, 23, and 24]) and the three reference genes: Function of immune relevant genes, designed RT-qPCR primers, product size (bp), annealing temperature (Ann. Temp.) and temperature for fluorescence acquisition (Fluor. Temp.).
Gene |
Function | Primers (5' - 3') |
Size (bp) |
Ann. Temp. (°C) |
Fluor. Temp. (°C) |
---|---|---|---|---|---|
Barrier-to-autointegration factor | early response gene to viral infections | F: gccgcaggctagaggagaag | 116 | 57 | 80 |
BAF | R: ggcccctgtggtatttttca | ||||
C-C motif chemokine 19 CCL19 |
recruiting monocytes, neutrophils, and other effector cells from vessels towards the focus of infection | F: ctcctgccaccaagaacaac | 119 |
57 |
78 |
R: acccacagcctttcagtgtc | |||||
NOD-like receptor family CARD NLRC5 |
recognition of microbial pathogens | F: acctgacccatgaggatgga | 217 |
57 |
82 |
R: gcagcaagcccacaaaacat | |||||
Interferon regulatory factor 1 IRF-1 | modulating the expression of interferon genes | F: gctgctctgtgacagttgga | 105 |
60 |
75 |
R: gcacgatttaacaaaagagtggat | |||||
Interferon alpha 1 IFN-a1 |
signaling pathways in response to pathogen infection or pathogen associated molecular pattern stimulation | F: acagcgaaacaaacagctattt | 89 |
57 |
73 |
R: gacacacgctctgcatactg | |||||
Interferon gamma IFN-g |
signaling pathways in response to pathogen infection or pathogen associated molecular pattern stimulation | F: actgaaagtccactataagatctc | 370 | 57 | 83 |
R: tggaacttaagggccagtttg | |||||
Major histocompatibility complex I MHC-I |
initiating CD8+ cytotoxic T cell-mediated cellular immunity | F: tgaagccatcaaaacaacca | 138 | 60 | 75 |
R: gagcaaagatcgaacatgtca | |||||
60S ribosomal protein L28 |
F: catccgcaagagcaactaca | 101 | 60 | 83 | |
R: cctcttcaccaccaccacac | |||||
40S ribosomal protein S10 |
R: cccaagaagaaccgtattgc | 121 | 60 | 80 | |
R: gaaggttgggcacgttctt | |||||
Ubiquitin |
F: cttcatcttgtgctgcgtct | 147 | 60 | 82 | |
R: acacttcttcttgcggcagt |