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. 2018 Oct 22;13(10):e0206164. doi: 10.1371/journal.pone.0206164

Table 2. The seven selected genes associated with immune response in fish species (according to [21, 22, 23, and 24]) and the three reference genes: Function of immune relevant genes, designed RT-qPCR primers, product size (bp), annealing temperature (Ann. Temp.) and temperature for fluorescence acquisition (Fluor. Temp.).

Gene
Function Primers
(5' - 3')
Size
(bp)
Ann.
Temp.
(°C)
Fluor.
Temp.
(°C)
Barrier-to-autointegration factor early response gene to viral infections F: gccgcaggctagaggagaag 116 57 80
BAF R: ggcccctgtggtatttttca
C-C motif chemokine 19 CCL19
recruiting monocytes, neutrophils, and other effector cells from vessels towards the focus of infection F: ctcctgccaccaagaacaac 119
57
78
R: acccacagcctttcagtgtc
NOD-like receptor
family CARD
NLRC5
recognition of microbial pathogens F: acctgacccatgaggatgga 217
57
82
R: gcagcaagcccacaaaacat
Interferon regulatory factor 1 IRF-1 modulating the expression of interferon genes F: gctgctctgtgacagttgga 105
60
75
R: gcacgatttaacaaaagagtggat
Interferon alpha 1
IFN-a1
signaling pathways in response to pathogen infection or pathogen associated molecular pattern stimulation F: acagcgaaacaaacagctattt 89
57
73
R: gacacacgctctgcatactg
Interferon gamma IFN-g
signaling pathways in response to pathogen infection or pathogen associated molecular pattern stimulation F: actgaaagtccactataagatctc 370 57 83
R: tggaacttaagggccagtttg
Major histocompatibility complex I MHC-I
initiating CD8+ cytotoxic T cell-mediated cellular immunity F: tgaagccatcaaaacaacca 138 60 75
R: gagcaaagatcgaacatgtca
60S ribosomal protein L28
F: catccgcaagagcaactaca 101 60 83
R: cctcttcaccaccaccacac
40S ribosomal protein S10
R: cccaagaagaaccgtattgc 121 60 80
R: gaaggttgggcacgttctt
Ubiquitin
F: cttcatcttgtgctgcgtct 147 60 82
R: acacttcttcttgcggcagt