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. 2018 Oct 10;12(10):e0006867. doi: 10.1371/journal.pntd.0006867

Fig 1. A phylogenetic tree constructed from the whole genome sequence alignment of available TPE and TEN complete genome sequences (S3 Table).

Fig 1

The tree was constructed using the Maximum Likelihood method based on the Tamura-Nei model [19] and MEGA software [20]. The bar scale corresponds to a difference of 0.0001 nucleotides per site. Bootstrap values based on 1,000 replications are shown next to the branches. There were a total of 1,189 informative positions in the final dataset. Genome sequence of TEN strain Bosnia A was used as an outgroup. Both TPE strains of Indonesian origin were highly related to each other when compared to the genetic diversity detected among other, previously characterized TPE strains. Both intergenic spacer regions within the rrn operons, the tprK (TP0897) and tprD (TP0131) gene sequences and the repetitive sequences within the arp (TP0433) and TP0470 genes were omitted from the analysis. The TPE Kampung Dalan K363 and TPE Sei Geringging K403 strains are shown in bold.