Table 2.
Read and OTU distribution of the samples obtained through next generation sequencing (Illumina), diversity indices (calculated using QIIME workflow) and taxonomical distribution
| GR1 | GR3 | DB2 | |
|---|---|---|---|
| Parameters | |||
| Number of reads | 627,638 | 435,940 | 472,180 |
| OTUs (97% identity) | 7837 | 12,774 | 10,617 |
| Estimated total OTUs (Chao1) | 15,448.14 | 32,314.94 | 25,135.21 |
| Shannon diversity index | 6.148 | 4.443 | 6.369 |
| Simpson index | 0.9452 | 0.7081 | 0.95 |
| Equitability | 0.475 | 0.326 | 0.476 |
| Goods coverage | 0.9933 | 0.9819 | 0.9863 |
| Archaeal taxa (% Reads) | 0.03 | 0.0002 | 0.02 |
| Bacterial taxa (% Reads) | 95.41 | 99.14 | 97.07 |
| Unclassified (% Reads) | 4.56 | 0.86 | 2.91 |
| Number of Archeal taxa detected | |||
| Phylum | 2 | 1 | 2 |
| Class | 3 | 1 | 5 |
| Family | 2 | 1 | 3 |
| Genus | 2 | 1 | 3 |
| Genus e | 2 | 2 | 2 |
| Genus common in 3 samples | 1 | ||
| Number of Bacterial taxa detected | |||
| Phylum | 49 | 46 | 49 |
| Class | 118 | 96 | 116 |
| Family | 213 | 186 | 215 |
| Genus | 280 | 244 | 285 |
| Genus common in 3 samples | 139 | ||
eDetected through clone library