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. 2018 Aug 28;68(4):442–448. doi: 10.1270/jsbbs.17127

Table 2.

SSR makers associated with 100-seed weights (100SW) in the BC3F5 chromosome segment substitution line (CSSL) population over different years

Year Marker name QTL Chr. (LG) Physical position (bp)a/Genetic position (cM)b LODc PVE (%)d Adde M (QQ)f M (qq)g DHR(%)h
2014 Sat_180 qSW12.1 Gm12 (H) 38,388,961/104.37 6.78 15.25 −1.21 12.26 14.69 19.17
BARCSOYSSR_14_0645 qSW14.1 Gm14 (B2) 13,276,701/– 3.00 6.27 −1.11 12.37 14.59 8.33
Satt431 qSW16.1 Gm16 (J) 35,718,476/78.57 4.52 9.72 −1.38 12.10 14.86 8.33
Satt582 qSW17.1 Gm17 (D2) 9,949,907/53.84 8.99 21.16 −1.75 11.72 15.23 11.67

2015 Sat_180 qSW12.1 Gm12 (H) 38,388,961/104.37 10.07 21.06 −1.28 14.01 16.56 19.17
Satt490 qSW13.1 Gm13 (F) 36,699,447/97.97 3.77 6.94 −0.87 14.41 16.16 14.17
BARCSOYSSR_14_0645 qSW14.1 Gm14 (B2) 13,276,701/– 5.18 9.80 −1.24 14.05 16.53 8.33
Satt582 qSW17.1 Gm17 (D2) 9,949,907/53.84 7.16 14.11 −1.28 14.00 16.57 11.67
Satt354 qSW20.1 Gm20 (I) 34,569,381/46.22 3.83 7.07 −1.24 14.04 16.53 5.83

2016 Sat_129 qSW8.1 Gm8 (A2) 14,730,465/84.08 7.66 13.16 −1.95 7.74 11.63 6.67
Sat_126 qSW9.1 Gm9 (K) 44,406,619/108.19 3.46 5.46 −1.43 8.25 11.12 5.00
Sat_180 qSW12.1 Gm12 (H) 38,388,961/104.37 12.31 23.25 −1.64 8.04 11.32 19.17
BARCSOYSSR_14_0645 qSW14.1 Gm14 (B2) 13,276,701/– 6.63 11.17 −1.62 8.07 11.30 8.33
Sat_086 qSW17.2 Gm17 (D2) 39,875,727/118.66 3.33 5.25 −1.96 7.72 11.65 2.92
a

Physical positions are based on Glycine max Wm82.a2.v1 (Schmutz et al. 2010).

b

Genetic positions are based on SoyBase (https://soybase.org/).

c

LOD: LOD score calculated from single marker analysis.

d

PVE (%): Phenotypic variation explained by the marker.

e

Add: Estimated additive effect of the marker.

f

M (QQ): Mean value of the QTL genotype of donator parent.

g

M (qq): Mean value of the QTL genotype of recurrent parent.

h

DHR: Genotype ratio of the donor homozygous allele.