Table 4.
Genetic diversity of Arabidopsis thaliana populations from each sampling estimated for two flowering genes (FRI and FLC) and one seed dormancy gene (DOG1). The number of multilocus haplotypes (NH) with the number of sampled individuals in parenthesis (N), the number of polymorphisms (NP) that were not in linkage disequilibrium, and silent (πsilent) and non-synonymous (πnon-syn) nucleotide diversity are given.
| Population | FRI | FLC | DOG1 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| N H (N) | NP | πsilent | πnon-syn | N H (N) | NP | πsilent | πnon-syn | N H (N) | NP | πsilent | πnon-syn | |
| AGU (2004) | 2 (9) | 5 | 0.00076 | 0.00055 | 4 (9) | 4 | 0.00454 | – | 3 (10) | 3 | 0.00595 | 0.00374 |
| AGU (2012) | 2 (23) | 5 | 0.00147 | 0.00042 | 2 (23) | 3 | 0.00080 | – | 2 (23) | 2 | 0 | 0.00292 |
| CDC (2003) | 5 (9) | 12 | 0.00204 | 0.00094 | 4 (9) | 3 | 0.00232 | – | 1 (10) | 0 | 0 | 0 |
| CDC (2012) | 3 (23) | 2 | 0.00012 | 0 | 3 (23) | 3 | 0.00217 | – | 1 (23) | 0 | 0 | 0 |
| MAR (2003) | 6 (9) | 12 | 0.00373 | 0.00153 | 3 (9) | 2 | 0.00107 | – | 3 (10) | 5 | 0.00395 | 0.00148 |
| MAR (2012) | 15 (23) | 16 | 0.00255 | 0.00158 | 5 (21) | 4 | 0.00256 | – | 4 (21) | 5 | 0.03650 | 0.00370 |
| SAN (2003) | 5 (9) | 13 | 0.00163 | 0.00248 | 1 (9) | 0 | 0 | – | 4 (10) | 7 | 0.00224 | 0.00560 |
| SAN (2013) | 9 (23) | 20 | 0.00149 | 0.00199 | 1 (21) | 0 | 0 | – | 7 (23) | 8 | 0.01108 | 0.00550 |