Table 2.
Distribution and annotation of conserved motifs in AP2/ERF family genes.
| Family | Motif | Best matched sequences | Sites | E-value | Annotation |
|---|---|---|---|---|---|
| ERF | 1 | WLGTFDTAEEAARAYDRAAFRMRGS | 56 | 3.0e-1007 | AP2 domain related |
| 2 | KEKRYRGVRRRPWGKYAAEIRDPSRKGRR | 56 | 5.8e-1049 | AP2 domain related | |
| 3 | KAKLNFPLEVV | 51 | 5.90E-148 | ||
| 4 | QEREVVEFEYLDDKLLEELLD | 14 | 1.50E-88 | ||
| 5 | SLREMKYGCEEGCSPVIALKRKHSMRRK | 5 | 8.20E-32 | ||
| 6 | LPFNENDSEDMVLYGVLSDAVNSGW | 6 | 1.20E-21 | ||
| 7 | RIVRIIVTDPDATDSSSDDDE | 6 | 1.70E-20 | ||
| 8 | DLALLESIRQHLLGDD | 8 | 1.30E-17 | ||
| 9 | MKYERKFSASLYAFNGIQECM | 4 | 6.70E-13 | ||
| 10 | QHHHHRQ | 7 | 4.20E-12 | ||
| 11 | MCGGAIISDFIPGPRGRRLTSDDLW | 3 | 1.30E-10 | ||
| 12 | RRPLPLDLNLPPPLE | 7 | 8.50E-10 | EAR66 | |
| 13 | DGDICPFCNINGCLGCNFF | 3 | 5.30E-07 | putative zinc-finger7 | |
| 14 | QQQQQQQQQQ | 5 | 1.70E-05 | ||
| 15 | SGEPEPVRVTPKRRSPEPS | 6 | 3.00E-05 | ||
| 16 | RRRVKRYVNEINIE | 7 | 1.10E-04 | ||
| 17 | YGNTSSSPASSSSLPGGVGEG | 5 | 1.30E-04 | ||
| 18 | GPIKYTEHRTVTNKL | 4 | 2.10E-03 | ||
| 19 | NTRTNFWPCSPSPNSRPALPSKIANLLLQRLKARNN | 2 | 8.10E-03 | ||
| DREB | 1 | GKWVSEIREPNKKTRIWLGTFPTAEMAARAYDVA | 38 | 6.1e-919 | AP2 domain related |
| 2 | ALALRGSSARLNFPELVNSLPRPASSSPS | 38 | 6.40E-271 | CIPK1237 | |
| 3 | PVYRGVRQRKW | 37 | 2.70E-235 | AP2 domain related | |
| 4 | DIQAAAAKAAAAFR | 23 | 1.40E-54 | CIPK1237 | |
| 5 | DEESPLDMPKLLMDMAEGLLLSPPHMVSN | 9 | 7.40E-50 | ||
| 6 | RKPPAKGSKKGCMKGKGGPEN | 7 | 1.60E-48 | CMIV-17 | |
| 7 | RNGSKSVAETLARWKEYNDHLDSSNDEGK | 4 | 6.70E-16 | ||
| 8 | PKKRAGRKKFKETRH | 4 | 5.20E-14 | CMIII-37 | |
| 9 | QQHHQYHHHHHHHQH | 5 | 2.60E-12 | ||
| 10 | QFFKPLEDDHIEQMIZELJDYGYIELC | 2 | 1.20E-07 | ||
| 11 | WDDLEETADVSLWSY | 8 | 3.90E-06 | LWSY7 | |
| 12 | MDARYTDHLDFDFLPPEVGESSSDSGSARRLNLSDEEVLL | 2 | 3.70E-04 | ||
| 13 | IGLNNLTPSQILZIQAQIQLQ | 2 | 2.70E-03 | CMI-37 | |
| 14 | STSTSTSSSSSS | 22 | 5.10E-03 | ||
| 15 | LDAKLQAISQ | 6 | 3.60E-02 | CMI-27 | |
| 16 | NVAPVTVRLSPSQIQ | 3 | 4.00E-03 |
Sites, number of motif distribution in genes; E-value, statistical significance of motif. EAR, ERF-associated amphiphilic repression; CIPK12, CBL-interacting serine/threonine-protein kinase-12.