Table 2.
Number of differentially expressed genes (log2 FC > │2│; q < 0.05) in EHEC EDL933 incubated in filtered digestive contents and M9-Glc
| Digestive contents | upa | downb | Total |
|---|---|---|---|
| After 3 hours of incubation | |||
| Small intestine/M9 | 347 | 354 | 701 |
| Rectum/M9 | 290 | 250 | 540 |
| Small intestine/rectum | 109 | 171 | 280 |
| After 6 hours of incubation | |||
| Rumen/M9 | 337 | 280 | 617 |
| Small intestine/M9 | 346 | 254 | 600 |
| Rectum/M9 | 305 | 320 | 625 |
| Rectum/rumen | 277 | 401 | 678 |
| Small intestine/rectum | 283 | 173 | 456 |
anumber of up-regulated genes ; bnumber of down-regulated genes
The comparison between small intestine and rumen after 6h of incubation does not appear in the table because of the low significance of the statistical analysis