Table 1.
Number of genes expressed in repressive TAD classes
| Domains | # Genes | # Expressed in Kc cells | # Expressed in S2 cells | # Expressed in female salivary glands | # Expressed in male salivary glands | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| X | Auto | X | Auto | X | Auto | X | Auto | X | Auto | |
| LAD | 590 | 2600 | 113 (8.16)a |
350 (9.74) |
126 (9.54) |
382 (12.71) |
110 (5.29) |
507 (4.93) |
110 (5.25) |
503 (4.66) |
| Null | 888 | 5006 | 352 (15.82) |
1633 (16.17) |
346 (15.43) |
1593 (17.89) |
278 (6.03) |
1465 (5.78) |
276 (6.14) |
1460 (5.74) |
| Black | 463 | 2887 | 26 (3.06) |
145 (2.75) |
32 (5.08) |
155 (3.85) |
52 (3.06) |
369 (3.77) |
52 (3.13) |
372 (3.61) |
| Repressive TADs (overlap) |
285 | 1438 | 16 (5.99) |
41 (2.22) |
17 (10.22) |
47 (2.09) |
30 (2.80) |
165 (3.64) |
31 (2.84) |
165 (3.53) |
| Non-repressive TADs (overlap) |
621 | 3411 | 545 (24.75) |
2725 (24.22) |
535 (22.78) |
2623 (25.12) |
376 (7.34) |
1863 (7.26) |
377 (7.32) |
1865 (7.34) |
aMedian gene expression levels in FPKMs (Kc and S2 cells) and normalized intensity (salivary glands)