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. Author manuscript; available in PMC: 2018 Oct 25.
Published in final edited form as: Cell Rep. 2018 Aug 28;24(9):2356–2369.e5. doi: 10.1016/j.celrep.2018.07.098
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Anti-mouse NLRP3 Adipogen Cat# AG-20b-0014
Anti-mouse caspase-1 p20 Adipogen Cat# AG-20B-0042
Anti-mouse calpain 1 Cell Signaling Technology Cat# 2556; RRID: AB_2290836
Anti-mouse calpain 2 Cell Signaling Technology Cat# 2539; RRID: AB_2069843
Anti-β Actin Cell Signaling Technology Cat# 4970; RRID: AB2223172
Anti-human IL-1β Cell Signaling Technology Cat# 12703
Anti-GAPDH Cell Signaling Technology Cat# 2118; RRID: AB_561053
Anti-mouse Myosin IIa Cell Signaling Technology Cat# 3403S; RRID: AB_2147297
Anti-mouse Flightless-1 Santa Cruz Cat# SC-55583; RRID: AB_831341
Anti-human Caspase-1 Santa Cruz Cat# SC-622; RRID: AB_2069053
Anti-mouse ASC Santa Cruz Cat# SC-22514-R; RRID: AB_2174874
Anti-mouse IL-1β antibody R&D Cat# AF-401-NA; RRID: AB_416684
HRP-conjugated goat anti-rabbit IgG Cell Signaling Technology Cat# 7074s; RRID: AB_2099233
HRP-conjugated horse anti-mouse IgG Cell Signaling Technology Cat# 7076s; RRID: AB_330924
HRP-conjugated donkey anti-goat IgG Santa Cruz Cat# SC-2020; RRID: AB_631728
All the fluorescent secondary antibodies Jackson ImmunoResearch N/A
Chemicals, Peptides, and Recombinant Proteins
Al(OH)3 Sigma Cat# V900163
Calcium pyrophosphate Sigma Cat# 401552
Uric acid Sigma Cat# U2625
ATP Sigma Cat# A2383
PMA Sigma Cat# P1585
Glyburide Sigma Cat# G2539
CFTRinh-172 Sigma Cat# C2992
Monosodium urate (MSU) crystals (Shi et al., 2003) N/A
GlyH-101 TargetMol Cat# T2451
Calpeptin Selleck Cat# S7396
Nigericin Tocris Cat# 4312
PD150606 Tocris Cat# 1269
2-APB Tocris Cat# 1224
E. coli 0111:B4 LPS Sigma Cat# L4391
Naked poly(dA:dT) Invivogen Cat# tlrl-patn
Ultrapure Flagellin Invivogen Cat# tlrl-epstfla-5
Murine GM-CSF PeproTech Cat# AF-315–03
Murine IL-4 PeproTech Cat# AF-214–14
DiBAC4(5) AAT Bioquest Cat# 21410
DSS Thermo Cat# 21555
CMAC peptidase substrate (t-BOC-Leu-Met) Thermo Cat# A6520
MQAE fluorescent probe Beyotime Cat# s1082
Critical Commercial Assays
LDH release detection kit Beyotime Cat# c0016
Mouse IL-1β ELISA ready-set-go kits eBioscience Cat# 50–171-85
Mouse TNFα ELISA ready-set-go kits eBioscience Cat# 50–173-31
Mouse IL-6 ELISA ready-set-go kits eBioscience Cat# 50–112-8696
Human IL-1β ELISA ready-set-go kits eBioscience Cat# 50–112-5196
Human TNFα ELISA ready-set-go kits eBioscience Cat# 50–173-66
Experimental Models: Cell Lines
Human: HEK293FT Dr.Wei Guo’s Lab N/A
Human: THP-1 ATCC ATCC: TIB-202
Mouse: L929 ATCC ATCC: CCL-1
Experimental Models: Organisms/Strains
C57BL/6 mice The Jackson Laboratory JAX 000664
Oligonucleotides
gRNA targeting sequence: CAPN1 atcacgccggtgtactgcactgg, and tgggaccctcttccgtgatgagg. This paper N/A
qPCR primers for mouse Flightless-1: 5’-tctgcagaagctggagcac-3’ and 5’-ttggcccgagctacaatg-3’ This paper N/A
qPCR primers for mouse Nlrp3: 5’-gaattccggccttacttcaa-3’ and 5’-ggtgtgtgaagttctggttgg-3’ This paper N/A
qPCR primers for mouse II-1b: 5’-ttgacggaccccaaaagat-3’ and 5’-gaagctggatgctctcatctg-3’ This paper N/A
qPCR primers for human CAST: 5’-aaccagccacggataaagatg-3’ and 5’-agcagcggccttagattcttc-3’ This paper N/A
Non-targeting shRNA: Misson pLKO.1- puro Control Vector,
TRC1.5 Negative Controls
Sigma SHC002
Non-targeting shRNA: TRC2 Transduction Control, DNA,
PLKO-PUR, TRC2 Negative Controls
Sigma SHC202
shRNA sequence: CAST #1 Sigma TRCN0000073638
shRNA sequence: CAST #2 Sigma TRCN0000073642
shRNA sequence: CAPN1 Sigma TRCN0000003559
shRNA sequence: CAPN2 Sigma TRCN0000003539
Software and Algorithms
FlowJo_V10.0.8 FlowJo, LLC https://www.flowjo.com
Graphpad Prism 6 software Graphpad Prism N/A
Adobe Illustrator CC 2015 Adobe N/A
ImageJ NIH https://imagej.nih.gov/ij/download.html
Cleavage site prediction algorithm (GPS-CCD 1.0) (Liu et al., 2011) http://ccd.biocuckoo.org/down.php