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. 2018 Jul 23;4(9):e000199. doi: 10.1099/mgen.0.000199

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© 2018 The Authors

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 1. — Evolutionary relationships and geographical locations of samples. (a) MP tree inferred from 59 363 SNPs among 40 whole-genome sequences. Branches with bootstrap support of <70 % are shown in red. The total tree length is 143 686. The CI (excluding parsimony uninformative characters) and RI values for different sets of genomes are indicated to the right of the tree. Geographical region of samples corresponding to different clades are also shown to the right of the tree. (b) Map of South-East Asia (inset) and Thailand/Laos showing sample origins and coloured according to clade designation.