Table 13.
Timing of the CAMUR executions, number of iterations and execution mode
| Experiment | Cancer | CAMUR_time | Iterations | Mode |
|---|---|---|---|---|
| RNA sequencing | BRCA | 14d:20h:59m:20s | 60 | Loose |
| THCA | 05d:04h:00m:51s | 100 | Loose | |
| KIRP | 00d:00h:01m:22s | 100 | Loose | |
| DNA methylation | BRCA | 29d:00h:21m:19s | 44 | Loose |
| THCA | 29d:00h:19m:52s | 39 | Loose | |
| KIRP | 00d:00h:25m:51s | 100 | Loose | |
| Combined | BRCA | 29d:20h:21m:25s | 7 | Loose |
| THCA | 07d:20h:53m:16s | 100 | Loose | |
| KIRP | 00d:01h:34m:08s | 100 | Loose |
We specified different maximum number of iterations according to the computation time, 80% as minimum threshold value for the classification reliability, and loose as execution mode. It is worth noting that only 7 iterations in 29 days have been performed for the combined matrix of BRCA, because the extracted classification models are composed of a high number of genes