Table 4.
Example of RNA sequencing matrix on breast cancer data
RNA sequencing | GDA_rna | SCN3A_rna | SCN3B_rna | Class |
---|---|---|---|---|
TCGA-A1-A0SD-01A-11R-A115-07 | 0.6 | 28.4 | 43.6 | Normal |
TCGA-A7-A4SD-01A-11R-A266-07 | 0.0 | 6.4 | 1.9 | Tumoral |
.. | .. | .. | .. | .. |
TCGA-3C-AALK-01A-11R-A41B-07 | 0.0 | 5.3786 | 18.2044 | Tumoral |
The columns represent genes, and the last shows the class. For each row, we consider the full TCGA identifier of the sample. The full identifiers is called TCGA aliquot and reports the type of the performed NGS experiment (RNA sequencing). The gene expression values are reported for all samples