Table 5.

Example of DNA methylation matrix on breast cancer data

DNA methylation	GDA_dMeth	SCN3A_dMeth	SCN3B_dMeth	Class
TCGA-A7-A4SD-01A-11D-A268-05	1.6	2.3	2.0	Tumoral
TCGA-GI-A2C9-01A-11D-A21R-05	1.9	2.7	2.3	Tumoral
..	..	..	..	..
TCGA-3C-AALK-01A-11D-A41Q-05	3.8	2.1	3.8	Normal

Also in this case, rows are represented by the TCGA aliquot of samples, reporting the type of the performed NGS experiment (DNA methylation). The gene methylation quantity values are reported for all samples