Table 1. Summary of the analysis of the de novo assembly and EST-SSR identification.
| Category | Items | Description |
|---|---|---|
| Raw reads | Total raw reads | 109,714,290 |
| Clean reads | Total clean reads | 106,054,784 |
| Total clean nucleotides (nt) | 13.26 G | |
| Q20 (%) | 95.69% | |
| Q30 (%) | 91.49% | |
| GC content (%) | 47.87% | |
| Unigenes | Total sequences | 127,261 |
| Total sequence bases (Kb) | 79,698 | |
| Largest (bp) | 21,950 | |
| Smallest (bp) | 201 | |
| Average (bp) | 612 | |
| N50 (bp) | 957 | |
| N90 (bp) | 249 | |
| Annotated | 67,494 | |
| EST-SSR | Total number of tested sequences | 127,261 |
| Total size of tested sequences (Kb) | 79,698 | |
| Total number of identified SSRs | 18,335 | |
| Number of SSR-containing sequences | 15,433 | |
| Number of sequences containing more than one SSR | 2,427 | |
| Number of SSRs present in compound formation | 778 |