Table 2. Characterization of SSR analysis in assembled unigenes.
Repeat type | SSR number | Proportion (%) |
Distribution density (1/kb) |
Number of motif | Main repeat motif |
---|---|---|---|---|---|
Mono- | 9,128 | 49.78 | 1/8.87 kb | 2 | A/T (98.55%) |
Di- | 4,884 | 26.64 | 1/16.57 kb | 4 | AG/CT (67.28%) |
Tri- | 4,166 | 22.72 | 1/19.42 kb | 10 | AAG/CTT (24.48%) |
Tetra- | 116 | 0.63 | 1/697.62 kb | 28 | AAAT/ATTT (25.86%) |
Penta- | 19 | 0.10 | 1/4259.13 kb | 15 | AAGAG/CTCTT (15.78%) |
Hexa- | 22 | 0.12 | 1/3678.34 kb | 21 | - |
Total | 18,335 | 100 | 1/4.41 kb | 78 | - |