Table 3.

Consensus substitutions in different PRI/PRVABC59/2015 sequences, with numbers representing the nucleotide position in the genome for each sequence.

Alignment position	KX377337.1	KU501215.1_NR-50240	JCVI_KX087101.3_NR-50240*	KX601168.1
1965	G at 1965	G at 1964	T at 1937	T at 1947
2781	G at 2781	T at 2780	T at 2753	T at 2763
8283	T at 8283	C at 8282	C at 8255	C at 8265
		Missing 1 base at 5′ and 131 base at 3′ end compared to KX377337.1	Missing 28 base at 5′ and 1 base at 3′ end compared to KX377337.1	Missing 18 base at 5′ and 110 base at 3′ end compared to KX377337.1

^*Sequenced at JCVI as part of the current work.