Parameter |
Value |
DNA Persistence Length |
50 nm |
DNA Stretching rigidity, h
|
6.4 kcal/mol/n2
|
DNA Bending Rigidity, g
|
5.8 kcal/mol |
DNA Twisting Rigidity, s
|
14.3 kcal/mol |
DNA Equilibrium Twist Value, φ0
|
.033 ± .209 rad (0 ± 12 ◦) |
van der Waals radius (DNA-DNA), σl−l
|
3.6 nm |
van der Waals radius (DNA-Core), σl−c
|
2.4 nm |
van der Waals radius (DNA-Tail), σl−t
|
2.7 nm |
van der Waals radius (DNA-LH, Globular head), σlLHg
|
3.4 nm |
van der Waals radius (DNA-LH, C-term), σl−LHc
|
3.6 nm |
van der Waals radius (Core-Tail), σc−t
|
1.8 nm |
van der Waals radius (Core-LH, Globular head), σc−LHg
|
2.2 nm |
van der Waals radius (Core-LH, C-term), σc−LHc
|
3.4 nm |
van der Waals radius (Tail-LH, Globular head), σt−LHg
|
1.6 nm |
van der Waals radius (Tail-LH, C-term), σt−LHc
|
2.7 nm |
van der Waals radius (LH-LH, Globular head), σLHg−LHg
|
1.5 nm |
van der Waals radius (LH-LH, C-term), σLHc−LHc
|
1.8 nm |
Electrostatic Long Range Cutoff |
7 nm |
Lennard-Jones Long Range Cutoff |
4 nm |
Temperature, T
|
293 K |
Salt Concentration (NaCl) |
150 mM |