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. Author manuscript; available in PMC: 2018 Oct 27.
Published in final edited form as: J Phys Chem B. 2017 Mar 31;121(15):3882–3894. doi: 10.1021/acs.jpcb.7b00998

Table 2:

Systems and linker lengths modeled. Unless otherwise stated, no linker histones are included. NFRs are denoted in brackets. For exact values of linker length pairs analyzed in systems 8 and 9, see figures.

Designation Composition Linker Length (bp) Linker Length Sequence (bp) Ref
1 Uniform 100% 18 (NRL = 165) Uniform (18,18,18,18,18,18,18,18,18,18,...) 41
2 Uniform 100 % 27 (NRL = 174) Uniform (27,27,27,27,27,27,27,27,27,27,...) 41
3 Life-like 70% 18, 20% 27, 10% 36 27 36 18 27 18 27 27 18 27 36
18 18 18 18 36 18 18 18 36 27
18 18 18 36 36 36 27 18 18 18
36 18 18 18 27 27 36 18 27 27
27 36 18 27 18 18 36 18 27 18
27 36 18 18 36 36 27 27 27 36
18 27 18 27 18 18 27 18 27 36
18 27 18 18 18 27 18 36 27 18
18 27 27 27 27 18 27 36 36 27
18 18 27 36 18 18 27 18 27 27
23
4 Life-like with NFRs
Short NFRs: [72 bp]
Long NFRs: [162 bp]
70% 18, 20% 27, 10% 36 [162] 36 18 27 18 27 27 18 [72] 36
18 18 18 18 36 18 18 [72] 36 27
18 18 18 36 [72] 36 27 18 18 [72]
36 18 18 18 27 27 36 [72] 27 27
27 36 18 27 [162] 18 36 18 27 18
27 36 18 18 36 36 27 [72] 27 [162]
18 27 18 27 18 18 27 18 27 36
18 27 [72] 18 18 27 18 36 27 18
18 27 27 27 27 18 27 36 36 27
18 18 27 36 18 [162] 27 18 27 27
15,23
5 Gene encoding-like
Short NFRs: [72 bp]
Long NFRs: [162 bp]
70% 18, 20% 27, 10% 36 with short linkers at the 5′ end 5′ [162] 18 18 18 18 18 27 36 [72] 18
18 18 27 18 36 27 27 [72] 18 18
18 36 18 27 [72] 18 18 18 27 [72]
18 18 18 18 18 27 36 [72] 18 18
36 27 18 27 [162] 18 18 18 27 18
36 27 18 27 18 27 36 [72] 18 [162]
18 18 18 27 18 18 18 18 27 36
18 27 [72] 18 18 18 18 18 27 18
18 27 18 36 27 18 18 36 36 18
18 18 27 36 18 [162] 18 18 18 18 3′
15,23
6 Gene encoding-like 12LH 70% 18, 20% 27, 10% 36 15,23
7 Gene encoding-like +LH 70% 18, 20% 27, 10% 36 15,23
8 Random (7 pairs of linker lengths) 50% x (18–71), 50% y (18–71) Random (x,y,y,x,x,y,y,x,y,x,y...)
9 Alternating (7 pairs of linker lengths) 50% x (18–71), 50% y (18–71) Alternating (x,y,x,y,x,y,x,y,x,y...) 42