Table 1.
Bacterial taxa differences at the family and genus level observed in individuals with major depressive disorder.
| References | Family | Genus |
|---|---|---|
| Differences in relative abundance | ||
| Naseribafrouei et al. (38) | Lacnopiraceae (down) | Alistipes (up) |
| Oscillibacter (up) | ||
| Jiang et al. (37) | Acidaminoccocaceae (up) | Alistipes (up) |
| Mothur metastats | Enterobacteriaceae (up) | Blautia (up) |
| Fusobacteriaceae (up) | Clostridibum XIX (up) | |
| Porphyromonadaceae (up) | Lachnospiacea (up) | |
| Rikenellaceae (up) | Megamonas (up) | |
| Bacteroidaceae (down) | Parabacteroides (up) | |
| Erysipelotrichaceae (down) | Parasutterella (up) | |
| Lacnopiraceae (down) | Phascolarctobacterium (up) | |
| Prevotellaceae (down) | Oscillibacter (up) | |
| Ruminococcaceae (down) | Roseburia (up) | |
| Veillonellaceae (down) | Bacteroides (down) | |
| Dialister (down) | ||
| Faecalibacterium (down) | ||
| Prevotella (down) | ||
| Ruminococcus (down) | ||
| Jiang et al. (37) | Polphyromonadaceae (up) | Alistipes (up) |
| LefSe LDA | Eneterobacteriaceae (up) | Parabacteroides (up) |
| Alpha leve = 0.05 | Rikenellaceae (up) | Butyricimonas (up) |
| Effect size threshold = 2 | Erysipelotrichaceae (up) | Flavonifractor (up) |
| Peptostreptococcaceae (down) | Haemophilus (down) | |
| Pasterueliaceae (down) | Dialister (down) | |
| Ruminococcaceae (down) | Faecalibacterium (down) | |
| Escherichia shigella (down) | ||
| Ruminococcus (down) | ||
| Kelly et al. (8) | Prevoellaceae (down) | Prevotella (down) |
| Mann-Whitney U test | Thermoanaerobacteriaceae (up) | Dialister (down) |
| FDR adjusted 10% | Eggerthella (up) | |
| Holdemania (up) | ||
| Gelria (up) | ||
| Turicibacter (up) | ||
| Paraprevotella (up) | ||
| Anaerofilum (up) | ||
| Lin et al. (9) | ||
| Wilcoxon's sign rank test | Prevotella | |
| Steptococcus | ||
| Clostridibum XIX | ||
| Zheng et al. (39) | Actinomycineae (up) | Parvimonas (up) |
| Random forest classifier | Coriobacterineae (up) | Anerostipes (up) |
| Lactobacillaceae (up) | Blautia (up) | |
| Streptococcaceae (up) | Dorea (up) | |
| Clostridales incertae sedis XI (up) | Lachnospiraceae incertae sedis (up) | |
| Eubacteriaceae (up) | Clostridium IV (up) | |
| Lachnospiraceae (up) | Alistipes (down) | |
| Ruminococcaceae (up) | Coproccus (down) | |
| Erysipelotrichaceae in certae sedis (up) | Clostridium XIVa (down) | |
| Bacteroidaceae (down) | Phascolarctobacterium (down) | |
| Rikenellaceae (down) | Megamonas (down) | |
| Lachnospiraceae (down) | Lachnospiraceae incertae sedis (down) | |
| Acidaminococcaceae (down) | Roseburia (down) | |
| Vellonellaceae (down) | Faecalibacterium (down) | |
| Sutterellaceae (down) | ||